PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010529705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 770aa MW: 84437 Da PI: 5.6058 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + XP_010529705.1 52 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-10 | 45 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 47 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.52 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-6 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-5 | 52 | 95 | No hit | No description |
Pfam | PF00249 | 3.3E-6 | 52 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MQVEPQVLLN AASPLDQGPL LNQDGNPSFA ASTATNVVQL PGAKKPTRQW AAWTHQEEES 60 FFTALRQVGK NFEKITSRVQ SKNKDQVRHY YYRLVRRMNK LLGPELSLDA KNPKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKLFIES LEHQLLKDRK KSIRKRVCQG ENFSAASLGS 180 FSNQSRERGV DNRSLKLILV DSQNIQKLGP GRASIIHSES LGISHGDEKE DIAASRGGRQ 240 RRKQAGLSSS PAYRRWEKAA INGVSLVADA AEHLERASID KNIDCRKDSG PSEHQSIGKS 300 LLSLGSSDHN PLNETNMQSA TKLKLQLFPI DECTRRALET GKHNPHLELT LSNRKKISSV 360 LEHLNRKWGN SSAASGDLML FPYSARKETV MSHQRWTQDS FLSAGDVHSM VGSPSVFRLR 420 YGWFIRSAWG SLTSQAPISA SCLQVEQDMN VDEVIGHVAE SAPLSLHSTA EPSRSLEPSQ 480 SVAGPSSEIL AHRAESRENL EQISASGPHN EKETGNMSSS DQIDNDDLHV GNDNALSAGE 540 WADSLTNISI GDLLSEAPGD LLSEAPDNID SDCADPQVED TECLLQDVPF ASDSFDAAIA 600 AHILRHHNEI GASLTLPSGS CLLWDDEETR DTFSFQNNRL ANASLSAVAS PVGTSKLNAE 660 PSHSVEGLPE PDLPSKSADL EDPMEEAPIE PNTADSPERT TLCGLADVYW PDSLGPLDLD 720 IRSSKYSNED LILSDSLGGL SRLIASSLDA FQNCSIFGSE NKSKDQPSMV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010529705.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010529705.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_010529713.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_010529721.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | D7LJ99 | 0.0 | D7LJ99_ARALL; Tsl-kinase interacting protein 1 | ||||
STRING | XP_010529705.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9633 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |