PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529501.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 385aa    MW: 44034.2 Da    PI: 8.5251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05124147123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ Cg++F +++ L++H r  H
  XP_010529501.1 124 YFCGVCGRRFYSNDKLVNHFRQiH 147
                     78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10107.3E-545123IPR029060PIN domain-like
SuperFamilySSF576671.62E-5123149No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5124149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.009124152IPR007087Zinc finger, C2H2
PROSITE patternPS000280126147IPR007087Zinc finger, C2H2
CDDcd061676.22E-13153276No hitNo description
PfamPF019367.3E-6196278IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10107.3E-5209264IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPAMFSRFLQ RSSRPKTTNP VLEFCRNSHS DSIKGLSSIN PKPISRVAVF WDLDNKPPAS  60
FPPYEAAIKL RATAASFGFV KQMVAYANHH AFKYVPVAVR EQRKERKVLN QMENKGLIQP  120
PEPYFCGVCG RRFYSNDKLV NHFRQIHETE NQKRLRQIES AKGNRRVRLV GKYTMKMDKY  180
KRAARKVLTP KEGYGLAEEL KRGGFRVKEV SDNPEAADKA LKEHMIYVMD KREVECVVLV  240
SDDSGFAGIL REAKERCVRT VVVGDLNDGA LKRVADVGFS WKEVVIGKAK KQVDKVVGKW  300
KDRDVLKKLE WTYDPVMEKE KMKERGFSHV WDCEFNDDGE EIETGAGLDS WEMTGAGAWW  360
EMDDEDNDGS SIPCEEKYED CGEDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529497.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529499.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529500.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529501.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529502.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529503.10.0PREDICTED: uncharacterized protein LOC104806346
RefseqXP_010529504.10.0PREDICTED: uncharacterized protein LOC104806346
TrEMBLA0A1J3JFS60.0A0A1J3JFS6_NOCCA; Uncharacterized protein
STRINGXP_010529497.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.10.0C2H2 family protein