PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529450.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 600aa MW: 64527.4 Da PI: 6.7043

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.6e-31	348	406	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_010529450.1 348 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 406 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	332	408	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-28	340	408	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	342	408	IPR003657	WRKY domain
SMART	SM00774	3.7E-37	347	407	IPR003657	WRKY domain
Pfam	PF03106	9.8E-27	349	406	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MEKGYNKGYG TITLDSSDCT FLPGKSPPFP RVSDSSLLLH SSHHHDLSGN SNADNRDMFR 60 FPMSLGGPRG GGDLRQGQPP PADEHRVAVD EVDFFSEKRD RVSRDNTADE TNRVHVKMEI 120 SRVEDDDRSR DVNIGLNLLT ANAGSDESTV DDGLSMDMEE KRAKSEQMVQ LQGELQKMKE 180 ENQRLREMLN QASSNYSSLQ MQLVAVMRQQ EHRNSSQDHL LGAEGKSDGR TRQEQPAMVP 240 RQFIDLGPLS SAAEHDTEVS SEERTTVRSG SPPPILENSN QRDDGKRLLG REASPETESN 300 GWGNPKKVPK HNPSGNGNGN VIDQSAAEAT MRKARVSVRA RSEVPMISDG CQWRKYGQKM 360 AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA AMAMASTTTA 420 AASMLLSGSM ASQEGLMNPT NLLARAIFPC SSSMATISAS APFPTITLDL TTNSANAGNN 480 PNPNATATAT ANNPLLQFAQ RPGFAASALN PSVLPQVVSQ ALYYNNNQQS KFSGLQLPAQ 540 PLPTAAATAA IAADPNFAAA LAAAITSIIN GSGHQPNSGG GNSNNNNSNN VATTSNGDTR

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MEKGYNKGYG TITLDSSDCT FLPGKSPPFP RVSDSSLLLH SSHHHDLSGN SNADNRDMFR  60
FPMSLGGPRG GGDLRQGQPP PADEHRVAVD EVDFFSEKRD RVSRDNTADE TNRVHVKMEI  120
SRVEDDDRSR DVNIGLNLLT ANAGSDESTV DDGLSMDMEE KRAKSEQMVQ LQGELQKMKE  180
ENQRLREMLN QASSNYSSLQ MQLVAVMRQQ EHRNSSQDHL LGAEGKSDGR TRQEQPAMVP  240
RQFIDLGPLS SAAEHDTEVS SEERTTVRSG SPPPILENSN QRDDGKRLLG REASPETESN  300
GWGNPKKVPK HNPSGNGNGN VIDQSAAEAT MRKARVSVRA RSEVPMISDG CQWRKYGQKM  360
AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA AMAMASTTTA  420
AASMLLSGSM ASQEGLMNPT NLLARAIFPC SSSMATISAS APFPTITLDL TTNSANAGNN  480
PNPNATATAT ANNPLLQFAQ RPGFAASALN PSVLPQVVSQ ALYYNNNQQS KFSGLQLPAQ  540
PLPTAAATAA IAADPNFAAA LAAAITSIIN GSGHQPNSGG GNSNNNNSNN VATTSNGDTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	334	410	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00447	DAP	Transfer from AT4G22070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529450.1	0.0	PREDICTED: probable WRKY transcription factor 31 isoform X1
Swissprot	Q93WT0	0.0	WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBL	A0A1J3ETF8	0.0	A0A1J3ETF8_NOCCA; Putative WRKY transcription factor 31
STRING	XP_010529450.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	0.0	WRKY DNA-binding protein 31