PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529147.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 348aa    MW: 38219.5 Da    PI: 7.7551
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33187244259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+
  XP_010529147.1 187 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCNVKKRVERSYQDPTVVITTYEGQHNHP 244
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-35171246IPR003657WRKY domain
SuperFamilySSF1182901.31E-29178246IPR003657WRKY domain
PROSITE profilePS5081132.902181246IPR003657WRKY domain
SMARTSM007741.4E-38186245IPR003657WRKY domain
PfamPF031065.2E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSNETKDLYS YPYASSYLFE DDHSYNHKII NPLDHHLVSG PSAFGNNISQ GFDPSSYTTL  60
SFTDCLRSSP TAYESLEKAF GLSPSSSEVF SSIDQGNVSH QKGSNIGATT ESTTRVSVSS  120
NSSSEADRPD EDSGRSRRKR EAVTGGGEED HGGENSKKIG KAKKNEEKKQ KEPRVAFMTK  180
SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTTQRCNVK KRVERSYQDP TVVITTYEGQ  240
HNHPIPSNLR GSSAAAMFST ASYYSSADPR TLAHDFLRTS SANYSGGNLG GGGAAVLMHG  300
YGQSQSQSGG GNNSVNVNPS SQQHAGYLQG SDYELLKEIF PSFFKHEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-29176247778Probable WRKY transcription factor 4
2lex_A4e-29176247778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529147.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ21e-124WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D3DET21e-125A0A0D3DET2_BRAOL; WRKY transcription factor
TrEMBLA0A3P6ER931e-125A0A3P6ER93_BRAOL; WRKY transcription factor
STRINGXP_010529147.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-98WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]