PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529094.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 349aa    MW: 40513.9 Da    PI: 6.1514
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix104.38.7e-33188273187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++ev aLi++r+++e +++++  k+ lWee+s  m++ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  XP_010529094.1 188 RWPRDEVEALIRLRTNVEANYQENGTKGSLWEEISTGMQSLGYSRSAKRCKEKWENINKYFKKVKESNKKR-PVDSKTCPYFHQLEA 273
                     8*********************************************************************8.9999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.549181245IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.7E-5184244IPR009057Homeodomain-like
SMARTSM007170.0035185247IPR001005SANT/Myb domain
PfamPF138371.9E-23187274No hitNo description
CDDcd122031.56E-24188252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
GSGHKLTNPY NFARNVPSLN LFSSSTSSST ASEEEEEEEE EGKRPRKRRR YWKGLLKRLT  60
NDLMEKQEEM QKRFLETLEK REKERIEREQ AWRVQETARI NREYEIIAHE RSASAAKDTA  120
IISFLQKVSG QQQQQQQLQK QNHTQQQTRE DHSIAFLNDQ KHETRIVEAA SKTSNSDSSY  180
MLSLSSSRWP RDEVEALIRL RTNVEANYQE NGTKGSLWEE ISTGMQSLGY SRSAKRCKEK  240
WENINKYFKK VKESNKKRPV DSKTCPYFHQ LEAIHKEKNT NPTLPLMAAP QQLLLLPQET  300
IDEPDKHKMG DEEGDKEEDE EEGDNETGGF ETVLNKTCSP VDINNNVFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529094.10.0PREDICTED: trihelix transcription factor GT-2-like, partial
SwissprotQ391171e-117TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTY01e-121D7KTY0_ARALL; Uncharacterized protein
STRINGXP_010529094.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-81Trihelix family protein