PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529017.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GeBP
Protein Properties Length: 428aa    MW: 47307 Da    PI: 6.3971
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.51.1e-34193292298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifels 92 
                     lfqrl+seeDei+lL+G+++f+a++g +p+d++daf+efvkksi+f++++ ql++KirrL+kKf+k vkk     k+g++ + sk+hdqk+f+l 
  XP_010529017.1 193 LFQRLFSEEDEIALLRGMLEFTANNG-DPYDHTDAFCEFVKKSINFNATRAQLFDKIRRLRKKFEKSVKKsvkmGKNGEDRVYSKAHDQKAFDLW 286
                     79************************.9****************************************99988899******************* PP

          DUF573  93 kkiWgs 98 
                     kkiWgs
  XP_010529017.1 287 KKIWGS 292
                     ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-30194291IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAPKRPDPVE SPPAASSSED EDEVESSSEE ETDQDEKKEG LASDDEVDPP VKKRPEATAP  60
VAARNLNRKP EASESESESG SQTESESESE PERITNDAVK PLATKPTREP NKPRSDVVDL  120
PANPAAKRPS TELGKEGKVS KPMGLPANSA AKRPSTEMGK EGNASKRAKK MEDVKKPDDS  180
ESKKTGEDSK KQLFQRLFSE EDEIALLRGM LEFTANNGDP YDHTDAFCEF VKKSINFNAT  240
RAQLFDKIRR LRKKFEKSVK KSVKMGKNGE DRVYSKAHDQ KAFDLWKKIW GSDGALQSAQ  300
KSAKSKKNQG GSSKARVVLA SPKRGEAKME EDKEVVSNFA PVGCKNMGIT GRDMASLLKM  360
ENDDGFNELA VMEGWDMVDG AKKRELEEKW KKIRAGQMEL LLQRNEFIGE AARLIFEAVK  420
ANVAGFGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529017.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
STRINGXP_010529017.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-52DNA-binding storekeeper protein-related transcriptional regulator