PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528984.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 329aa    MW: 37010.6 Da    PI: 8.5754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.2e-191361250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++ + +r++ f +R+ +++KKA+EL +LCd+evavi ++++g++++++
  XP_010528984.1 13 SSKAQAKRKTGFERRQLTVMKKAQELATLCDVEVAVICYGPDGEIQTWP 61
                    678899******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-4163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.1241764IPR002100Transcription factor, MADS-box
PfamPF003192.7E-141760IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-161794IPR002100Transcription factor, MADS-box
CDDcd002665.98E-161986No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSSSCSSISS SSSSKAQAKR KTGFERRQLT VMKKAQELAT LCDVEVAVIC YGPDGEIQTW  60
PREMSKVKEV AEKYKKLSSA DKGKKNLTLH QFLGKIKKEE DDKKKKMKTG HDLDRYTAEE  120
LAVLFDSLDH KSQNLQERRQ FLHSQKRMTA DLSETKNDQF SVNQETKKPE SDLSLVPFEQ  180
QAAESVHLQE TLTYGSFNSV GHGSGPPHYG NFGPAINQAP TPLACYPNFA TNGEWAYNFD  240
FPGTQMGNQM SRNDSMMNMM NIGDYSRFLA PQAYQNHAFQ HPSGFIPNNI GFQTPLPQIQ  300
TPTPTLQQFD PLSAWNPTPS AVSRMFSRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528984.10.0PREDICTED: agamous-like MADS-box protein AGL103
STRINGXP_010528984.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38740.13e-22AGAMOUS-like 77