PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G38740.1
Common NameAGL77
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 426aa    MW: 48441 Da    PI: 8.064
Description AGAMOUS-like 77
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G38740.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-251867251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
  AT5G38740.1 18 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 67
                 799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-5868IPR002100Transcription factor, MADS-box
PfamPF003195.8E-142665IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-1527102IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6012769IPR002100Transcription factor, MADS-box
CDDcd002669.08E-183293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020090anatomyembryo sac central cell
PO:0020093anatomyantipodal cell
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTTIRSSPSS SRCSNSSSSS SYSLASTSLS NRLETIFKKA SELCTLCDIE ACVIYYGPDG  60
ELKTWPKERE KVRDIALRFN QLNEALRHKK SVNLHGFLNK KKKNKGLKNP NKKKKTSLKN  120
VNVLKYPLAD HYSPDQVSQL TQSLELNVSK FQERLRFLES QKQNETKPDH QSLTSISSLN  180
QSLNPSQFSL FMYNHGYNTL SQIPVSASNF NQDYISALLE QSELKSQIMK QEVCGYEQNM  240
CMSNHGDATL SQIPFSASNF NQDFSANNNF QHSFVSNTQD YYSVQKSVNN NYGLKNQLMK  300
HDLCGYEHNM CMSNHGDATF SQIPLSASNF NQDFSVSIQE ESGLMQQELC GYDQNQNMSM  360
GDITNNNFQV TCASVLESVN NFGLNQLMHK EFYGCHQNMS MGNINNNSFQ HPWVSNADHT  420
RRYKNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100114KKKNKGLKNPNKKKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184217890.0
Genevisible249419_s_at1e-137
Expression AtlasAT5G38740-
AtGenExpressAT5G38740-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G38740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G49420, AT5G65330, AT1G46408, AT1G48150
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G38740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114780.0AB011478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198690.10.0AGAMOUS-like 77
SwissprotQ9FIX01e-146AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLQ9FKR20.0Q9FKR2_ARATH; AGAMOUS-like 77
STRINGAT5G38740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  4. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]