PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528785.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GeBP
Protein Properties Length: 415aa    MW: 46289.6 Da    PI: 5.0075
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.72.3e-35181280298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifels 92 
                     lfqrl+se+Dei+lLqG+++f+a++g +p+ ++dafyefvkksi+fk+sk ql++KirrL++Kf+k vkk     ksg++  f k+hdqk+f+l 
  XP_010528785.1 181 LFQRLFSEDDEIALLQGILEFTASKG-DPYGHMDAFYEFVKKSINFKASKAQLFDKIRRLRRKFEKSVKKsvklGKSGEDRIFPKAHDQKAFDLW 274
                     79************************.9*****************************************9999999******************* PP

          DUF573  93 kkiWgs 98 
                     kkiWgs
  XP_010528785.1 275 KKIWGS 280
                     ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.0E-31182279IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAPKRPTPIE NPPAASSSEE ETEEEYSSEE EDPEEEPDRN EKKEDLASDD EDDEDDDDSP  60
VMKKPETTAP VVVTNLNHKP EASESEADSG SQTDSESESE HERTDNKAVK PVVNKSMVEI  120
PVSQKLGSTV LGLPANSTAK RPSTVLGKEG NKSKRAKMLE EEKKPEGSES KRTGEDTKKQ  180
LFQRLFSEDD EIALLQGILE FTASKGDPYG HMDAFYEFVK KSINFKASKA QLFDKIRRLR  240
RKFEKSVKKS VKLGKSGEDR IFPKAHDQKA FDLWKKIWGS DGALQSAQKS AKSKKNKGGS  300
SKAEVFAGSR LFDSPPKRGD AKREEDKEVV NNFEAITGRD MASLLKVENV SAFNELAVME  360
GWDMVDGAKK RELEEKWKKI QAGQMELLLQ RNEFIGEAAR LIFEAVKANV AGFGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528785.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
STRINGXP_010528785.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-50DNA-binding storekeeper protein-related transcriptional regulator