PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528246.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 380aa    MW: 42537.2 Da    PI: 8.2433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-16129175148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed ll ++v+++G + W+ Ia+++  gR +kqc++rw+++l
   XP_010528246.1 129 KGQWTPQEDRLLMQLVERHGIKKWSQIAKMLH-GRVGKQCRERWHNHL 175
                      799*****************************.*************97 PP
2Myb_DNA-binding54.62.6e-17181223145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eEd +l++a+ + G++ W+ Iar+++ gRt++ +k++w+
   XP_010528246.1 181 KDAWSEEEDRILIQAHMEIGNK-WAEIARRLP-GRTENTIKNHWN 223
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.976124179IPR017930Myb domain
SuperFamilySSF466895.03E-32126222IPR009057Homeodomain-like
SMARTSM007176.8E-15128177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-29130182IPR009057Homeodomain-like
CDDcd001676.71E-14132175No hitNo description
PfamPF139211.5E-19132189No hitNo description
PROSITE profilePS5129420.914180230IPR017930Myb domain
SMARTSM007172.7E-16180228IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-22183228IPR009057Homeodomain-like
CDDcd001674.36E-12183226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSINPFPCNF AFEAFLYNVS SNQEFFTMDS TGPGALSEGI SGILHGLPEH VMWDGTLHGQ  60
PEHDQGLTVA EPVLESSMVE SLPLDLVPAV DIRNRCQDQA MKAGQIIKKS KRMMMRRGSK  120
SSKKANIIKG QWTPQEDRLL MQLVERHGIK KWSQIAKMLH GRVGKQCRER WHNHLRPDIK  180
KDAWSEEEDR ILIQAHMEIG NKWAEIARRL PGRTENTIKN HWNATKRRQH SRRTKGKDEN  240
ALVPRSQALQ DYIRSVTDDD PSNAVAAIAA ANASRRVRDK GKRAAVQEQR RDHEMGERYD  300
FGNNCEYLVN GVMGLRLDAG AQMQIPAITS ASGSGSASAS GSGTEFDEQI LDSWMLMYGC  360
DQLMMNEIAL LETLTGGGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-441272292104MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-4412722956158MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-4412722956158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-441272292104C-Myb DNA-Binding Domain
1msf_C1e-441272292104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528246.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057091.10.0PREDICTED: uncharacterized protein LOC104805385
SwissprotQ9LVW41e-116MY118_ARATH; Transcription factor MYB118
TrEMBLV4KZ101e-122V4KZ10_EUTSA; Uncharacterized protein
STRINGXP_010528246.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-114myb domain protein 118
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]