PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528063.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 394aa    MW: 45353.5 Da    PI: 6.8361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.31.8e-2783164286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s++++y+++++
  XP_010528063.1  83 WVQDETRSLIAFRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSTKISYYKEID 164
                     ********************************************************************84...445789**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-473144IPR009057Homeodomain-like
PROSITE profilePS500908.45575139IPR017877Myb-like domain
SMARTSM007178.5E-579141IPR001005SANT/Myb domain
CDDcd122037.06E-3081146No hitNo description
PfamPF138379.0E-2282166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MFVSDKPRPI DFYKDNDDSS AVAARDMIVE VTANGDLPPH HHHHHHHHHQ LHQAQQQQQQ  60
MILGDSSGED HEVKAPKKRA ETWVQDETRS LIAFRREMDS LFNTSKSNKH LWEQISSKMR  120
EKGFDRSPTM CTDKWRNLLK EFKKAKHQDR GSGSTKISYY KEIDEILRER SKKAAQYKSP  180
TPSSKVDSFM QFTDKGFDDT SISFGSVEAS ARPALNLERR LDHDGHPLAI ATADAVAATA  240
VPTWNWRETP GNAADGQSFG GRVITVKFGE YTRRIGIDGT AEAIKEAIRS AFRLRTRRAF  300
WLEDDEQVVR SLDRDMPLGN YTLHVDEGLA IKVCHYDDSD QLPVHTEEKI FYTEEDYRDF  360
LARRGWSCLR EFDGFRNIDN MDDLQPGALY RGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5077162186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528063.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A067JSB40.0A0A067JSB4_JATCU; Uncharacterized protein
STRINGXP_010528062.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]