PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528062.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 395aa    MW: 45424.6 Da    PI: 6.8361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.31.8e-2783164286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s++++y+++++
  XP_010528062.1  83 WVQDETRSLIAFRREMDSLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSTKISYYKEID 164
                     ********************************************************************84...445789**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-473144IPR009057Homeodomain-like
PROSITE profilePS500908.45575139IPR017877Myb-like domain
SMARTSM007178.5E-579141IPR001005SANT/Myb domain
CDDcd122036.90E-3081146No hitNo description
PfamPF138379.0E-2282166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MFVSDKPRPI DFYKDNDDSS AVAARDMIVE VTANGDLPPH HHHHHHHHHQ LHQAQQQQQQ  60
MILGDSSGED HEVKAPKKRA ETWVQDETRS LIAFRREMDS LFNTSKSNKH LWEQISSKMR  120
EKGFDRSPTM CTDKWRNLLK EFKKAKHQDR GSGSTKISYY KEIDEILRER SKKAAQYKSP  180
TPSSKVDSFM QFTDKGFDDT SISFGSVEAS ARPALNLERR LDHDGHPLAI ATADAVAATA  240
VPTWNWRETP GNAAADGQSF GGRVITVKFG EYTRRIGIDG TAEAIKEAIR SAFRLRTRRA  300
FWLEDDEQVV RSLDRDMPLG NYTLHVDEGL AIKVCHYDDS DQLPVHTEEK IFYTEEDYRD  360
FLARRGWSCL REFDGFRNID NMDDLQPGAL YRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-5077162186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528062.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A067JSB40.0A0A067JSB4_JATCU; Uncharacterized protein
STRINGXP_010528062.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]