PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527736.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 367aa    MW: 40895.9 Da    PI: 9.1611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057311333123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010527736.1 311 HECPICFRVFKSGQALGGHKRSH 333
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0621133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3251138IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-71233No hitNo description
PfamPF139121.1E-61335IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-41335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-7306333No hitNo description
SMARTSM003550.14311333IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974311333IPR007087Zinc finger, C2H2
PfamPF139122.7E-10311333IPR007087Zinc finger, C2H2
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MIALKKQQQI LLCKECGKGF SSLKALCGHM ACHSDRDKMA MDSQSDSETS STTIRRRSKR  60
VMKRHRAFVV HRSCSASEVE QEEQEELALC LMMLSRDYSN FKKVQNFVNC VGESSDTNSV  120
ILETKSSSGE LKHVGGFRCN ADEISAAKNQ KQLKSPQENG VLLYDSDNSD SGYFRNGPRK  180
VDSDVSIDGF LRNAGSNKAM MESGFGFSNS PAKQDKNLNR LRNGTEFRKE SYKEGGSSRS  240
SAKYDLRKSK RVSSYSRKKI ETNELNESVH DSGENSLEAD SCSDMNHNSS KALIAAAACK  300
KTRAKKRSKG HECPICFRVF KSGQALGGHK RSHFMGSHHE NSTVVIQQEV TQMHTMIDLN  360
LPAPFDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303309AKKRSKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527736.10.0PREDICTED: uncharacterized protein LOC104805032 isoform X2
TrEMBLR0GTA21e-125R0GTA2_9BRAS; Uncharacterized protein
STRINGXP_010527735.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-88C2H2-like zinc finger protein