PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527635.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24102 Da    PI: 5.0469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-223281150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k i+ +s+rqvtfskRr g++KKA EL vLC+a++a++ fs  g++y++ 
  XP_010527635.1 32 KEIKQESKRQVTFSKRRRGLFKKAAELNVLCGAQIAILTFSRCGRIYTFG 81
                    6899********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-252483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.2962484IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-262498IPR002100Transcription factor, MADS-box
CDDcd002651.74E-322595No hitNo description
PRINTSPR004048.9E-212646IPR002100Transcription factor, MADS-box
PfamPF003192.9E-223480IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-214661IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-216182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEEAQTQNPN LTLNEQRPNP KTTRGRQKIE IKEIKQESKR QVTFSKRRRG LFKKAAELNV  60
LCGAQIAILT FSRCGRIYTF GSSDVDALLD KYLNGDPVKI GEYSGSGDAE VSTEEPWWCR  120
PVESIPEAEL EEYVAAMGEL RENVAARIRQ MGDRTVENAP VGVNSTVANM SEYRPTWRNL  180
TTENHGSVNL TVRNDRGHIM AFEDEGFEDQ FLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-162592168Myocyte-specific enhancer factor 2A
3kov_B1e-162592168Myocyte-specific enhancer factor 2A
3kov_I1e-162592168Myocyte-specific enhancer factor 2A
3kov_J1e-162592168Myocyte-specific enhancer factor 2A
3p57_A1e-162592168Myocyte-specific enhancer factor 2A
3p57_B1e-162592168Myocyte-specific enhancer factor 2A
3p57_C1e-162592168Myocyte-specific enhancer factor 2A
3p57_D1e-162592168Myocyte-specific enhancer factor 2A
3p57_I1e-162592168Myocyte-specific enhancer factor 2A
3p57_J1e-162592168Myocyte-specific enhancer factor 2A
5f28_A1e-162592269MEF2C
5f28_B1e-162592269MEF2C
5f28_C1e-162592269MEF2C
5f28_D1e-162592269MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527635.11e-159PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLV4KYJ43e-56V4KYJ4_EUTSA; Uncharacterized protein
STRINGXP_010527635.11e-158(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.14e-44M-type_MADS family protein