PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 418aa MW: 47476 Da PI: 8.9743 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 238 | 287 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r++lg+f taee a a++ a+ l+ge XP_010527493.1 238 YRGVRQRQ-WGKWVAEIRLPRN---RTRVWLGTFHTAEEGAMAYDTAAYILRGE 287 9****999.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-21 | 237 | 295 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-31 | 237 | 300 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 237 | 295 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 237 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 238 | 249 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.38E-29 | 238 | 296 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 238 | 287 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 260 | 276 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MNMENQFPKM ETNSFLHEDN KLLLSSRFHG ILNSSRSEQP LGAPRFLDGL KYPSSPSYSP 60 SSSFSSSSSS SSTPSPVTEA SNSVLYRSYI QKSCCFTVSD EFNTYVHQSL VPWNFLESFP 120 HPTQSQSQSP RVSDHQPPPK PPILNLFLRE PNFLELSQTE HLNNSDYNNI TPFCKSHNFT 180 PNLLQSDQNQ SKPINKTLTN NYPSKGFGNH WLSTTKTQPM KLTGSSRSPN KTSSGKMYRG 240 VRQRQWGKWV AEIRLPRNRT RVWLGTFHTA EEGAMAYDTA AYILRGEYAN LNFPDLRQQL 300 ETSSFRNMIA SLLESKLRQM SSSDKKNIGF DHEKASQEKI DLSESGLSTR SFKNLSRKLE 360 SGGEVMIQKQ KQSSVHHHHH HHHEEVMSES EGLQLSRMPS LDMDMIWDAL LVPAEGLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 233 | 294 | 1 | 63 | ATERF1 |
3gcc_A | 1e-20 | 233 | 294 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527493.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527493.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
Swissprot | Q9SVQ0 | 1e-112 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | D7MHD9 | 1e-111 | D7MHD9_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010527493.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10799 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-105 | ERF family protein |