PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527239.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 311aa MW: 35848.8 Da PI: 7.173

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.1	2.1e-22	48	128	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Liea+re++ +l+rg lk ++Wee++ + ++ + rs++qC++k+e+++kr+++++++ + +s +py++ ++ XP_010527239.1 48 WTHDETLLLIEAYREKWYSLGRGPLKSGHWEEIAVTVsARSSIDRSATQCRHKIEKMRKRFRAERQRVGP-----TSPWPYYSMMQ 128 ***********************************667778******************99997.....357**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-20	48	130	No hit	No description
PROSITE profile	PS50090	6.818	48	105	IPR017877	Myb-like domain
SMART	SM00595	7.0E-5	55	135	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MATPSPPSSS PSSSNPNSTT TPPPPRTTVV ALAAASSDGG RKPQPLLWTH DETLLLIEAY 60 REKWYSLGRG PLKSGHWEEI AVTVSARSSI DRSATQCRHK IEKMRKRFRA ERQRVGPTSP 120 WPYYSMMQEL ESNPKTPISA RPLTRLPPNA SNYFDEEEEE EEEEAGHEND DDEDDDNVEE 180 EEEEEDRRNK SRSINYILRR PGTVNRFAAA AAGAAASGGG EKAVYWGYEE RERKKTRKRK 240 VVERRRRGER EVAEEIRAFA ERVMAMERRK MEFAREMERK RAEMERRRHQ LIQTSQSRLL 300 HFVTNAFDDS L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	246	RKKTRKRKVVERRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527239.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	R0I446	1e-112	R0I446_9BRAS; Uncharacterized protein
STRING	XP_010527239.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	2e-75	Trihelix family protein