PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 179aa MW: 20209 Da PI: 8.9524 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 44.4 | 3.8e-14 | 3 | 28 | 31 | 57 |
ZF-HD_dimer 31 segeegtaaalkCaACgCHRnFHRrev 57 + + gt++alkCaACgCHRnFHR+e+ XP_010527155.1 3 A-EPGGTIDALKCAACGCHRNFHRKET 28 4.45589******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-7 | 1 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 11.304 | 1 | 27 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-11 | 1 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 87 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-18 | 92 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.3E-27 | 99 | 155 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MPAEPGGTID ALKCAACGCH RNFHRKETPD LALHPHAPPP PGYYRLPPPP VGYLHQRGPP 60 PPLSQAPPLQ LALPPPPPPP LQMRERRGEE EDYGGSGGRK RFRTKFTAEQ KERMLGLAER 120 IGWRIQRQDE ELVQRFCEET GVSRQVLKVW LHNNKHTLGK RPLLQEPPPP PSSHHENDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-32 | 99 | 157 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527155.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527155.1 | 1e-127 | PREDICTED: zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9FKP8 | 1e-51 | ZHD1_ARATH; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A398AN32 | 6e-63 | A0A398AN32_BRACM; Uncharacterized protein | ||||
STRING | XP_010527155.1 | 1e-126 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13237 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-40 | homeobox protein 22 |
Publications ? help Back to Top | |||
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