PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010527152.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SRS | ||||||||
Protein Properties | Length: 190aa MW: 21794.3 Da PI: 9.7382 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 115.7 | 6.5e-36 | 23 | 133 | 36 | 154 |
DUF702 36 athvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvs.svddgeee 129 + h+kstWvpa++rr+r q ++++++ ++++++ +r+ +++ +++ ++l ++ ++ +++P+e++s+avfrcvrvs svddg+++ XP_010527152.1 23 SCHIKSTWVPAYRRRQRLQPQTQSQT---QTQTQQPLQRPV----HHHYSTNPKRLREGLGI--ITPTHFPAELNSTAVFRCVRVSsSVDDGKDQ 108 57**************9766555433...333344444444....45666666776666533..45566****************7369****** PP DUF702 130 laYqtavsigGhvfkGiLydqGlee 154 +aYqt+vsigGhvfkGiLydqG+e+ XP_010527152.1 109 YAYQTTVSIGGHVFKGILYDQGPED 133 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-33 | 23 | 132 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 4.3E-28 | 82 | 131 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MPFYDADTRQ VHHQWASFVA GASCHIKSTW VPAYRRRQRL QPQTQSQTQT QTQQPLQRPV 60 HHHYSTNPKR LREGLGIITP THFPAELNST AVFRCVRVSS SVDDGKDQYA YQTTVSIGGH 120 VFKGILYDQG PEDEQRIIST VHPRHHHHHH HHQRQEFLLP SSSSCPLMTT TSPFTAFMSG 180 TEFSPPRQKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010527152.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010527152.1 | 1e-139 | PREDICTED: protein SHI RELATED SEQUENCE 3 | ||||
Swissprot | Q9SJT8 | 2e-39 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A3P6GXU0 | 2e-41 | A0A3P6GXU0_BRAOL; Uncharacterized protein | ||||
STRING | XP_010527152.1 | 1e-139 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 4e-37 | SHI-related sequence3 |