PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526389.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 449aa    MW: 50435.3 Da    PI: 4.624
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-351152062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk++e+++d+e++ ++sws++ nsf+v+d+ +f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F+ gkk+ll++
  XP_010526389.1 115 FLKKTFEMVDDPETDPIVSWSSTRNSFIVWDSYKFSANLLPRYFKHRNFSSFVRQLNTYGFRKVESDR---------WEFANEAFQGGKKHLLKN 200
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+rk +
  XP_010526389.1 201 IQRKGR 206
                     ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.3E-57111204IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-33111204IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-37111204IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-18115138IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-31115204IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18153165IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340154178IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-18166178IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAAIVDDGGN GSPAVEEIVN ITVTVKQEQS TSPSVTIVGG VDVDGGGGLS VRSSSAVEKA  60
KFDDAVSRVK EEEAEDQETV NAVNVNDGES PSSSSSGIGL PRPVEGLYDM GPPPFLKKTF  120
EMVDDPETDP IVSWSSTRNS FIVWDSYKFS ANLLPRYFKH RNFSSFVRQL NTYGFRKVES  180
DRWEFANEAF QGGKKHLLKN IQRKGRSNGN KQRQSRDTNA ISPSLCLETE IKSLKKEQSS  240
LRSEILKLKL QQEESDHKMG TMKERLCRAE SKQKHMLGFF AKVARDQGFV QRLMKRRKQR  300
QELEAGEFMK KLKMLQNQET EENSCDDDDD DVERDPIHEE LNSDILLDNE CWVLPAGDDE  360
FESCILDDNQ EETLMQHRSN TEMNLMCGAM SDEFMENDLV KTGDVTLSES KIYMELEDLI  420
GKTRGWGGGC MNGIVEQEQP GRVRAAPSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2411320427129Heat shock factor protein 1
5d5v_B5e-2411320427129Heat shock factor protein 1
5d5v_D5e-2411320427129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526389.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526389.10.0PREDICTED: heat stress transcription factor A-9
RefseqXP_010526390.10.0PREDICTED: heat stress transcription factor A-9
RefseqXP_010526391.10.0PREDICTED: heat stress transcription factor A-9
RefseqXP_010526392.10.0PREDICTED: heat stress transcription factor A-9
SwissprotQ9LVW21e-88HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A087GI261e-100A0A087GI26_ARAAL; Uncharacterized protein
TrEMBLA0A1R3JA374e-98A0A1R3JA37_9ROSI; Heat shock factor (HSF)-type, DNA-binding protein
STRINGXP_010526389.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-89heat shock transcription factor A9