PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526004.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 412aa    MW: 46968 Da    PI: 7.0214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.61.9e-17341131398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++rl lp+kf  ++++k   + t++l+++sg  ++v l  +   g+  ++ GW eFvk++ L+ +D +vFk+dg+s f   v +f+
  XP_010526004.1  34 HHRLALPRKFSIHCKKK--LPETVKLKSPSGVAYNVGL--QAENGTLSFRHGWDEFVKDHSLEKNDLLVFKFDGSSHF--DVLIFD 113
                     789*******9999755..888****************..9999999*************************999988..888887 PP
2B342.79.8e-14300389191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefe 91 
                     f+ v+++ +v+ +  l++p+k +++++ ++++  +++l+  + r+W+  + y ++++   l++GW++Fv++ng+ e D++vF+ +++  +   
  XP_010526004.1 300 FLVVMKRTHVTLKYFLSIPNKWLQKFMFIENQ--EVVLRV-DQRTWNTAFHYFRNKCYGGLSSGWRKFVHDNGIYECDICVFEPTSSvsKPLL 389
                     778899999999999***********888655..677655.89*******9988888888***********************7654233333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-2220113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.95822115IPR003340B3 DNA binding domain
CDDcd100171.05E-1924113No hitNo description
Gene3DG3DSA:2.40.330.107.5E-2124113IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-1925115IPR003340B3 DNA binding domain
PfamPF023621.8E-1434113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-16298399IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-6300398IPR003340B3 DNA binding domain
PfamPF023621.0E-12300388IPR003340B3 DNA binding domain
CDDcd100178.16E-15300396No hitNo description
PROSITE profilePS5086311.547300398IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-15300399IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEENCEDRME WEEEMYWTHF KFIHFSQFLL PGFHHRLALP RKFSIHCKKK LPETVKLKSP  60
SGVAYNVGLQ AENGTLSFRH GWDEFVKDHS LEKNDLLVFK FDGSSHFDVL IFDGESFCEK  120
ASSYFVRKRG QIEGMTGDRG KRKAADFSNV SSRSDVEKSP TEEPLVSPTC NEHGQHISSD  180
VQETPIEPFV ISPPGNEREQ GIAFVSDSRT LQNPVISPSG DGRVKEGKYT ISAFQGMQRD  240
GSNIENSDHM DIKPDIRTVS GCTERRSSSV KVFPERRAIT ETEKRNALSL AQAATSQDGF  300
LVVMKRTHVT LKYFLSIPNK WLQKFMFIEN QEVVLRVDQR TWNTAFHYFR NKCYGGLSSG  360
WRKFVHDNGI YECDICVFEP TSSVSKPLLL DVYIFRASGV DIKAIADPFT TA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526004.10.0PREDICTED: B3 domain-containing protein REM16-like
STRINGXP_010526004.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-123B3 family protein