PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525640.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 487aa    MW: 54709.9 Da    PI: 8.7153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87e-129683699
                    EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    ++l  +sg++W v+l    ++   ++ +GW  Fv+++ ++ gD++vF+++g+  f  +v+vf++
  XP_010525640.1  9 VSLLGPSGNTWHVEL--IHQGADLFFNQGWPAFVRDHYIECGDSMVFRYNGEWHF--TVQVFDS 68
                    78999**********..6666679*************************997777..9999986 PP
2B350.53.9e-16155249198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+ ++++ +v+ s  l +p kf  eh   ++++++++l+d++g  W+v+    +k   ++++ +GW  Fv++ng+k+gD+++F+l++  + el+v
  XP_010525640.1 155 FVRTMKKFNVSGSFTLNVPYKFSMEHL--PNCKTEIVLRDLKGVCWTVNSVPtTKVHTSHTFCGGWLAFVRSNGIKTGDICIFELVR--KYELLV 245
                     667788889999999*******99996..45899***************95557777779999*********************987..66779* PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++fr
  XP_010525640.1 246 HIFR 249
                     **98 PP
3B352.21.1e-163764571397
                     TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     s  l +p +f  ++     +++ +++l++++g+sW+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+++ e  ++v++ 
  XP_010525640.1 376 SYTLKIPHQFSMAYlP---HSKAEIILRNSRGESWTVNSVPDSKGRMvHTFCGGWMAFVRDNDIQMGDTCIFELTRECE--MRVHIS 457
                     45699*****988842...35568***************7766666679999*********************987444..577775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.437169IPR003340B3 DNA binding domain
CDDcd100176.07E-11167No hitNo description
SuperFamilySSF1019363.92E-16474IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-15771IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-9968IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-24148249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-25149250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-21153249No hitNo description
PROSITE profilePS5086313.352155251IPR003340B3 DNA binding domain
PfamPF023629.0E-14155249IPR003340B3 DNA binding domain
SMARTSM010192.3E-14155251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-23356458IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23357459IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-20362458No hitNo description
PROSITE profilePS5086313.944364460IPR003340B3 DNA binding domain
SMARTSM010195.0E-12364460IPR003340B3 DNA binding domain
PfamPF023626.5E-14373457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEGRNSGWVS LLGPSGNTWH VELIHQGADL FFNQGWPAFV RDHYIECGDS MVFRYNGEWH  60
FTVQVFDSSS CEKEAAFYSK CYQEGEKFDG HMGQKRGRNE AAHSLDVEGL SKRSREMSCG  120
CSSNGQEANE THYERGSELE EKELAENFTS PYPYFVRTMK KFNVSGSFTL NVPYKFSMEH  180
LPNCKTEIVL RDLKGVCWTV NSVPTTKVHT SHTFCGGWLA FVRSNGIKTG DICIFELVRK  240
YELLVHIFRV GKEEPGDQSG KGAFSGLDVL SNATSRKILE SLAKKSIKSS SNVHSKSLKS  300
VYTCDKTESK TQDKRKLGSS KSKTVKVSKC ASDKSESNGS SLRFMLALDE QKAAQSFTSA  360
FPNFVRIMRK FNISGSYTLK IPHQFSMAYL PHSKAEIILR NSRGESWTVN SVPDSKGRMV  420
HTFCGGWMAF VRDNDIQMGD TCIFELTREC EMRVHISRYG KKGMDTPLTK SADGMSINLA  480
SGIHPNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525640.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1R3IYN60.0A0A1R3IYN6_COCAP; Uncharacterized protein
STRINGXP_010525640.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein