PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525416.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 338aa    MW: 37739.9 Da    PI: 4.951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.9e-22146206259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqKe+ ++++prsY+rC  +   gC++ k+ ++ ++ p +++itY g+H+++
  XP_010525416.1 146 EDSHAWRKYGQKEILNAKYPRSYFRCRNKytqGCRAVKQAQKLEHRPGIFQITYIGNHTCN 206
                     8*************************988778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-22131206IPR003657WRKY domain
SuperFamilySSF1182901.57E-21139207IPR003657WRKY domain
PROSITE profilePS5081118.739140203IPR003657WRKY domain
SMARTSM007742.6E-31145207IPR003657WRKY domain
PfamPF031067.0E-20146205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDVKAIKRKV VEQLVEGYEF ATQLQLLLSK KSFDLRSPHD QTRPGSFPGL GPGPADDLML  60
KILGSFDKTI SVLGSFEPLS VLPAVEGSRN ASSGDSMAAI TVVSDARCED SGESRKRPSV  120
VDKGKRGCYK RKRKSQSWTV ESNTLEDSHA WRKYGQKEIL NAKYPRSYFR CRNKYTQGCR  180
AVKQAQKLEH RPGIFQITYI GNHTCNPNED SPVTAMIEPS EIVTEYSENA YCGSSSVVIT  240
TTAGTDQSSS KGCNNKQEDD DDSKIIGSQV KEEDTNGNQF QDLSLVWQDF MVLDDEHGEL  300
MNRYVHDDDM DDFMVFGRSD FSFGDTDQVS FSSDAYCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19139205268OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114133RKRPSVVDKGKRGCYKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525416.10.0PREDICTED: probable WRKY transcription factor 70
STRINGXP_010525416.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-68WRKY DNA-binding protein 54