PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525035.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 447aa MW: 48742.4 Da PI: 8.7113

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.5	4e-15	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW eE++++v+a k++G W++I +++g ++t+ q++s+ qk+ XP_010525035.1 62 RERWADEEHKKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 106 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.08E-15	56	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.992	57	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-8	59	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-15	60	109	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-11	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-12	62	105	IPR001005	SANT/Myb domain
CDD	cd00167	1.59E-8	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MVSSSSAMTV EGTCGGGRLT KAALRVGVSK SSDQQLQLNE QISGRKNFAP KVRKPYTITK 60 ERERWADEEH KKFVEALKLY GRAWRRIEEH VGTKTAVQIR SHAQKFFSKV ARDTTGSNGS 120 SVEPIVIPPP RPKRKPVHPY PRKLGNTSVK EISSTDQSRR SVSPNLSALE RDNQSPTSVL 180 SSVGSDAFGS ADSNSPNSSL SPVSYALQCE LMLSEPYGSA EASPSAALTT ATTAAEEPES 240 LKLELFPRQR LLSREESINQ PMKQSLKLFG KTVLLSDPNG SSALSTSCFC KSPQEANEGK 300 PIQPLPRKLT PAETSALNAE NILCWIQQNR QEATNACIEI SDLGGKEKGL QIEGSSTGSN 360 TCSDDDTGDA DKSSEVETPS SETNMEKKSE FKPSERSAFS QLKRTDSETR ARAFVPYRKR 420 KIVVETENKS SAMATETGED RNTSLCL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MVSSSSAMTV EGTCGGGRLT KAALRVGVSK SSDQQLQLNE QISGRKNFAP KVRKPYTITK  60
ERERWADEEH KKFVEALKLY GRAWRRIEEH VGTKTAVQIR SHAQKFFSKV ARDTTGSNGS  120
SVEPIVIPPP RPKRKPVHPY PRKLGNTSVK EISSTDQSRR SVSPNLSALE RDNQSPTSVL  180
SSVGSDAFGS ADSNSPNSSL SPVSYALQCE LMLSEPYGSA EASPSAALTT ATTAAEEPES  240
LKLELFPRQR LLSREESINQ PMKQSLKLFG KTVLLSDPNG SSALSTSCFC KSPQEANEGK  300
PIQPLPRKLT PAETSALNAE NILCWIQQNR QEATNACIEI SDLGGKEKGL QIEGSSTGSN  360
TCSDDDTGDA DKSSEVETPS SETNMEKKSE FKPSERSAFS QLKRTDSETR ARAFVPYRKR  420
KIVVETENKS SAMATETGED RNTSLCL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525035.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353109	2e-76	AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010525035.1	0.0	PREDICTED: protein REVEILLE 1
Swissprot	F4KGY6	1e-137	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	E4MX62	1e-135	E4MX62_EUTHA; mRNA, clone: RTFL01-17-B24
TrEMBL	V4N7S5	1e-135	V4N7S5_EUTSA; Uncharacterized protein
STRING	XP_010525035.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-113	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]