PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524963.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 354aa MW: 40155.5 Da PI: 7.5716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.8	7.6e-52	10	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+kk+++++ ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++ XP_010524963.1 10 LPPGFRFHPTDEELILHYLRKKISSSHQVPVSIIADVDIYKFDPWDLPAKAPYGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIAAA 104 79*******************9999555589***********988889**********************************998 PP NAM 96 ....kgel......vglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfykg+ pkg kt+W+mheyrl XP_010524963.1 105 anggE--IhrpvekIGVKKALVFYKGKPPKGIKTNWIMHEYRL 145 76550..1455556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	7	181	IPR003441	NAC domain
PROSITE profile	PS51005	60.575	10	181	IPR003441	NAC domain
Pfam	PF02365	7.0E-28	11	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KISSSHQVPV SIIADVDIYK FDPWDLPAKA 60 PYGEKEWYFF SPRDRKYPNG ARPNRAAASG YWKATGTDKV IAAAANGGEI HRPVEKIGVK 120 KALVFYKGKP PKGIKTNWIM HEYRLVDSLS PSRLSGCDRG LRSKESSMRL DDWVLCRIYK 180 KTQASPAFMA ATSDQEQEQE EDEEVSITGQ TLLPRLPQLT FPSIMSNDNT LKPPKSSCSF 240 SNPSDPGDLM FLSGFLADNP ENQTEFEFPL MFGSSDLDYG NGYLDQKLPR LTSPPLEKLG 300 TDNKRQRTDF VDEKMNPLKK TMNICGYNNN TMDQFDHSFM NQQLLLSPHL QFQG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MISKDPRSSL PPGFRFHPTD EELILHYLRK KISSSHQVPV SIIADVDIYK FDPWDLPAKA  60
PYGEKEWYFF SPRDRKYPNG ARPNRAAASG YWKATGTDKV IAAAANGGEI HRPVEKIGVK  120
KALVFYKGKP PKGIKTNWIM HEYRLVDSLS PSRLSGCDRG LRSKESSMRL DDWVLCRIYK  180
KTQASPAFMA ATSDQEQEQE EDEEVSITGQ TLLPRLPQLT FPSIMSNDNT LKPPKSSCSF  240
SNPSDPGDLM FLSGFLADNP ENQTEFEFPL MFGSSDLDYG NGYLDQKLPR LTSPPLEKLG  300
TDNKRQRTDF VDEKMNPLKK TMNICGYNNN TMDQFDHSFM NQQLLLSPHL QFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-70	9	185	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-70	9	185	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-70	9	185	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-70	9	185	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-70	9	185	19	172	NAC domain-containing protein 19
3swm_B	1e-70	9	185	19	172	NAC domain-containing protein 19
3swm_C	1e-70	9	185	19	172	NAC domain-containing protein 19
3swm_D	1e-70	9	185	19	172	NAC domain-containing protein 19
3swp_A	1e-70	9	185	19	172	NAC domain-containing protein 19
3swp_B	1e-70	9	185	19	172	NAC domain-containing protein 19
3swp_C	1e-70	9	185	19	172	NAC domain-containing protein 19
3swp_D	1e-70	9	185	19	172	NAC domain-containing protein 19
4dul_A	1e-70	9	185	16	169	NAC domain-containing protein 19
4dul_B	1e-70	9	185	16	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524963.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524963.1	0.0	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q84TD6	1e-152	NAC47_ARATH; NAC transcription factor 47
TrEMBL	D7L213	1e-153	D7L213_ARALL; ANAC047
STRING	XP_010524963.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-149	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]