PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 673aa MW: 74071 Da PI: 9.7184 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 8.1e-11 | 13 | 64 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 ++ W t+E++ll++av+++G+++W+++a ++ t+ +c++++++ XP_010524448.1 13 KQTWGTWEELLLACAVHRFGTDSWDSVAVELRkrtpslRSVTAASCRLKYLD 64 789*****************************55555544456666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.1E-6 | 12 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-4 | 12 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-5 | 13 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 13 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-6 | 15 | 66 | No hit | No description |
SMART | SM00297 | 1.4E-14 | 131 | 404 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 3.2E-15 | 302 | 419 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 4.06E-15 | 302 | 411 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.94E-14 | 306 | 399 | No hit | No description |
Pfam | PF00439 | 5.8E-11 | 312 | 389 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.264 | 314 | 385 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MAKPENNENF PEKQTWGTWE ELLLACAVHR FGTDSWDSVA VELRKRTPSL RSVTAASCRL 60 KYLDLKRRFS RKPSAAEDDT ATEIPAVPWL DELRKLRVAE LRREVERYDL SISSLQLKVK 120 RLEEERERSI KEDETETENS DLDKIAEKKE SYRDSDENSG KPAVGPANQS VNESNSPDPK 180 GDEPGTGSED DNREEKVTKP DTGEPNRSAG DGKPAGEDSC RGSCESGAKE SAGNSGRIDP 240 GREAGDSGEL IESVAESKGG ASRGEEEAKE TSDVQSSASL PRKDEADNEE DQSPTVKGIP 300 FESQPLADFL EILQSQSSGS HFSRRLQSQE TPEYGKIIRQ HVDFEMIRTR LEEGWYAVST 360 GKFFRDLLLL INNVRVFYGK GSSEFKASEQ LNELVREQMA LKVQKPTSQP KEESSMVPKA 420 VPESSHPLSL KPRMSVPMIA CRKRSSLAAR SSAPVQKKLK MTPVVDEKPA TDMEDEEKTS 480 DKDEEPLISK KRMTRERTSS NTKRAANKNV KNRSKIDTTS NVGLPTKGRS PNDSSEPKKS 540 DQEKKGNTSA SSKKQSVATF LKRMKGGSSS DTTPETGKTN SGADSSNLKR GAEQRKNNSN 600 KDKADAGKTQ TSQKRTSGKK QTNEKGSPAK KSSGRAPKRA AAASSSPSPA KRGKEVAEKE 660 AGPSTRAKKR TRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524448.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524440.1 | 0.0 | PREDICTED: dentin matrix acidic phosphoprotein 1-like | ||||
Refseq | XP_010524448.1 | 0.0 | PREDICTED: dentin matrix acidic phosphoprotein 1-like | ||||
TrEMBL | V4LP56 | 0.0 | V4LP56_EUTSA; Uncharacterized protein | ||||
STRING | XP_010524440.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 0.0 | DNA-binding bromodomain-containing protein |