PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524425.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 305aa    MW: 34400.7 Da    PI: 7.117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524425.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-141358146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_010524425.1 13 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLLRTGKSCRLRWVN 58
                     79*************************8887799**********87 PP
2Myb_DNA-binding45.61.6e-1469108344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++T+eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
   XP_010524425.1  69 KFTAEEERTVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 108
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-21661IPR009057Homeodomain-like
PROSITE profilePS5129421.422864IPR017930Myb domain
SuperFamilySSF466892.7E-2811108IPR009057Homeodomain-like
SMARTSM007175.6E-121262IPR001005SANT/Myb domain
PfamPF002499.3E-121358IPR001005SANT/Myb domain
CDDcd001678.83E-131560No hitNo description
Gene3DG3DSA:1.10.10.609.8E-1962114IPR009057Homeodomain-like
PROSITE profilePS5129418.70665116IPR017930Myb domain
SMARTSM007175.0E-1366114IPR001005SANT/Myb domain
PfamPF002495.9E-1369108IPR001005SANT/Myb domain
CDDcd001671.95E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRKMEAKKEE IKKGPWKAEE DEVLINHVKK YGPRDWSSIR SKGLLLRTGK SCRLRWVNKL  60
RPNLKNGCKF TAEEERTVIE LQAQFGNKWA RIATYLPGRT DNDVKNFWSS RQKRLARILQ  120
NSSGESSSRP HKFNSARSGR DSVGSSEVPG FGFVGQEMSA SSSKIVLPCS SAYLDASQPV  180
ETLAMPDLGI KLEPHPFAFG TDFGLMETSL FTETQTQISL TQLPQPQSSI QFSPDSQELL  240
ARLDDPCFYD ILGPGDSAQQ FSLPQPFFEP ARSHRHVGRD EPDVFLDDFP SDMFDQVDPL  300
HSPFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291011424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524425.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524425.10.0PREDICTED: transcription factor MYB59
SwissprotA0A178VEK71e-128DUO1_ARATH; Transcription factor DUO1
TrEMBLD7LRQ61e-129D7LRQ6_ARALL; Uncharacterized protein
STRINGXP_010524425.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-128MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]