PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22234.5 Da PI: 8.488 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113 | 2e-35 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+ +C++apyf e+ +++fa+vhk+FGasn +k+l +lp ++r da +l+yeA r+rdPvyG v+++++lq+q+ +l+ael XP_010524360.1 12 PCGACKFLRRKCVGGCIFAPYFDGEEgTSRFAAVHKVFGASNASKMLMKLPSNKRLDASVTLCYEALSRLRDPVYGPVSLLFSLQHQVVKLQAEL 106 7*********************888769******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_010524360.1 107 AYIQAR 112 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.517 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-35 | 12 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNGNMKGSGG GPCGACKFLR RKCVGGCIFA PYFDGEEGTS RFAAVHKVFG ASNASKMLMK 60 LPSNKRLDAS VTLCYEALSR LRDPVYGPVS LLFSLQHQVV KLQAELAYIQ ARLSTFQRFP 120 PQQLHPSLQI PPSLRWSSPS DMTQPSLPQV VVPNSHSPTD PSDFDLWEED PLAIDDRALL 180 QQQVATQLTA MNFPAAKLPA STSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-33 | 9 | 106 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-33 | 9 | 106 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524360.1 | 1e-150 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 3e-65 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A178VSY1 | 8e-63 | A0A178VSY1_ARATH; LBD19 | ||||
STRING | XP_010524360.1 | 1e-150 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 4e-64 | LOB domain-containing protein 19 |