PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010524053.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 714aa MW: 77508.6 Da PI: 5.9156

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010524053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	298	318	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_010524053.1 298 PCPDFRK-GACRRGDMCEYAHG 318 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.18E-17	41	183	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.6E-11	88	158	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.8E-17	88	182	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.81E-14	88	162	No hit	No description
SMART	SM00248	0.0013	89	119	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.043	89	182	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	9.2E-4	124	156	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.755	124	159	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	293	319	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-5	298	318	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	298	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	298	320	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.963	328	352	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	328	351	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MCCESDRSSL ILSSSSSSPG FFEDNDFVPY PDMNHLTVET EDTFASLLEL AANNDVEGFR 60 LSLERDPCCI DEVGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLII SLSDADVNRT 120 CGNDKTTALH CAASGGAVNA VEVVRLLLAA GADPNLFDGN GQRAGDVIVV PPKLEGVKFI 180 LQELLSAYGS TTADRKLHVV TNIPHSGSSP PPSPSLENGQ DSPLKFKSSD AKKEYPVDPS 240 LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP 300 DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC ARRVCFFAHT PEELRPLYAS 360 TGSAIPSPRS SADFAAAMSL LPGSPSSVSV MSPSPFTPPM SPSGAGNGNM AWPQPNVPAL 420 HLPGSNFQSS RLRSSLNARD ILAEDFNMLP DYDRQQLLNE FSGLSSNSLS RSGRMKPMNP 480 SNLDDLFSAE SSSSPRFADP ALASAVYSPM HKSAVFNQFQ QQSMLSPINT SFSPKNVDHP 540 LLQASFAGGR MSPRSGVEPI SPLSSRASML AQRDKQQQFQ FRSLSSRELR TNSSAIVGSP 600 VNSWSNLGSS NGKPDWTVSS DELGKLRRSS SFELGNGEEP DLSWVQSLVK ESPTDMKEKA 660 SSSSVQGPGL GPGSVAENNG DMNVNVTAEP ADHSAVLGAW IEQMQLDQLV AQQN

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MCCESDRSSL ILSSSSSSPG FFEDNDFVPY PDMNHLTVET EDTFASLLEL AANNDVEGFR  60
LSLERDPCCI DEVGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLII SLSDADVNRT  120
CGNDKTTALH CAASGGAVNA VEVVRLLLAA GADPNLFDGN GQRAGDVIVV PPKLEGVKFI  180
LQELLSAYGS TTADRKLHVV TNIPHSGSSP PPSPSLENGQ DSPLKFKSSD AKKEYPVDPS  240
LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  300
DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTGC ARRVCFFAHT PEELRPLYAS  360
TGSAIPSPRS SADFAAAMSL LPGSPSSVSV MSPSPFTPPM SPSGAGNGNM AWPQPNVPAL  420
HLPGSNFQSS RLRSSLNARD ILAEDFNMLP DYDRQQLLNE FSGLSSNSLS RSGRMKPMNP  480
SNLDDLFSAE SSSSPRFADP ALASAVYSPM HKSAVFNQFQ QQSMLSPINT SFSPKNVDHP  540
LLQASFAGGR MSPRSGVEPI SPLSSRASML AQRDKQQQFQ FRSLSSRELR TNSSAIVGSP  600
VNSWSNLGSS NGKPDWTVSS DELGKLRRSS SFELGNGEEP DLSWVQSLVK ESPTDMKEKA  660
SSSSVQGPGL GPGSVAENNG DMNVNVTAEP ADHSAVLGAW IEQMQLDQLV AQQN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010524053.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010524053.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30
Refseq	XP_010524061.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	E4MVK8	0.0	E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBL	V4M994	0.0	V4M994_EUTSA; Uncharacterized protein
STRING	XP_010524053.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]