PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010524043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24324.3 Da PI: 8.3035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 4.9e-40 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf ++q p++fa++h++FGasnv+kll+++p ++r +a+ s++yeA+ar++dPvyG+v++i++lqqq++ l+a+l XP_010524043.1 11 PCGACKFLRRKCASDCIFAPYFSSDQgPARFAAIHRVFGASNVSKLLHSVPVHDRCEAVVSIAYEAQARLSDPVYGCVAHIFALQQQVAFLQAQL 105 7************************999******************************************************************* PP DUF260 95 allkee 100 +lk++ XP_010524043.1 106 MQLKAQ 111 999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.197 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-39 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MASSSTGTGS PCGACKFLRR KCASDCIFAP YFSSDQGPAR FAAIHRVFGA SNVSKLLHSV 60 PVHDRCEAVV SIAYEAQARL SDPVYGCVAH IFALQQQVAF LQAQLMQLKA QLISHNNIAT 120 STTNISETQH LWQLASGFPT GTTPPYTRHG HVNPSTVSPQ SSLESFDQSN TSSDVTNVQE 180 IQSRGHDGLG FHEGYPNKKR LVTQCNNNDL SELQALARRM MRN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-39 | 2 | 115 | 2 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-39 | 2 | 115 | 2 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010524043.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524043.1 | 1e-167 | PREDICTED: LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 1e-100 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A087H4P0 | 3e-99 | A0A087H4P0_ARAAL; Uncharacterized protein | ||||
STRING | XP_010524043.1 | 1e-167 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-86 | lateral organ boundaries-domain 16 |