PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523975.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 469aa    MW: 51771 Da    PI: 4.911
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd ll  ++  +G g+W++ +++ g++R++k+c++rw +yl
   XP_010523975.1 14 KGRWTAEEDHLLSSYILSHGEGSWRSLPKHAGLKRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding551.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v+++  lG++ W++Ia +++ gRt++++k++w+++l
   XP_010523975.1  67 RGNITPQEEEIIVKLHSSLGNR-WSLIATHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.046961IPR017930Myb domain
SuperFamilySSF466898.07E-2811108IPR009057Homeodomain-like
SMARTSM007177.7E-111363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221568IPR009057Homeodomain-like
CDDcd001676.38E-81661No hitNo description
PROSITE profilePS5129426.77762116IPR017930Myb domain
SMARTSM007171.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569116IPR009057Homeodomain-like
CDDcd001672.60E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGRAPCCEKV GMKKGRWTAE EDHLLSSYIL SHGEGSWRSL PKHAGLKRCG KSCRLRWINY  60
LRSDIKRGNI TPQEEEIIVK LHSSLGNRWS LIATHLPGRT DNEIKNYWNS HLSRKLHSFI  120
RKTTVSQEVA AVVMNAIKNV NPSPSPKRRG RTRRSSMKVK TSNPKNSTRK TKQNVTGTHK  180
TKPPAADVER QENAESGGAI SRVCEERSGK KEAAKEDALM VLSSCSGGAD TSIGFIADLG  240
PCGYVDNIDY DLSINGDIED LSFDDTFDGY LHLDESGHVF SWYGEEEPNN PGDSEPVRGS  300
GDIKHSVSDQ DSAGLENIGG GSCSREILQS CPSVESFLSY DEVNDGSDEL MHSISEQTFV  360
GNGNLNSSGC RGVSVSGSSS WTGDATQSCS AVEFLNQDLA NEITDEFIDW DSVLHEGQNL  420
WEEKESPDSL LSWLLEDERT TAFGQSTSDY DSGEWDREKE NAMVTWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
1mse_C2e-23141164105C-Myb DNA-Binding Domain
1msf_C2e-23141164105C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151PKRRGRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523975.10.0PREDICTED: transcription factor MYB12-like isoform X2
STRINGXP_010523974.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-110myb domain protein 12