PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523638.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26040.4 Da    PI: 6.16
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.5e-18755250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    r++++  +++ f+kR +++  KA ELSvLCd+ v+ i ++++g+ly ++
  XP_010523638.1  7 RSKESKAKETAFAKRVQTLKNKARELSVLCDISVCFICYGPDGQLYHWP 55
                    67888999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-4157IPR002100Transcription factor, MADS-box
CDDcd002662.02E-15482No hitNo description
PROSITE profilePS5006611.942758IPR002100Transcription factor, MADS-box
PfamPF003191.5E-14954IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-17987IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASKKPRSKE SKAKETAFAK RVQTLKNKAR ELSVLCDISV CFICYGPDGQ LYHWPENPGD  60
VRTIATSYRA LSEENRRKRT VDLNAFLASE NSKTERPKKK RRLASEEPVC DEASNQQHSR  120
EDLRVLLSRI DSKLEEFHGR LSQKMVRGEQ PRGFEGFSGK KDTVFVEPEA TPILGEENRA  180
EIDVFGGLAD LDMGFEGFGH QSSCFGFGDC LLEMDPTLFA TDPVLQFEQI A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102PKKKRRL
297101KKKRR
397102KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523638.11e-172PREDICTED: agamous-like MADS-box protein AGL103
STRINGXP_010523638.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-23AGAMOUS-like 103