PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18353.8 Da PI: 5.1986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.7 | 5.2e-35 | 47 | 145 | 3 | 100 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +aCk+lrrkC+++Cv+apyf +e+ ++ fa+vhk+FGasn +kll+ +p++ r da+ +l yeA ar+rdPv G+v++i++l+qq+ +l+aela+ XP_010523197.1 47 EACKYLRRKCVEGCVFAPYFDSEDgTSLFAAVHKVFGASNATKLLSPIPPSLRLDAILTLSYEATARVRDPVFGCVSHIFSLHQQVVNLQAELAY 141 69******************998879********************************************************************* PP DUF260 97 lkee 100 ++++ XP_010523197.1 142 VQAR 145 9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.639 | 44 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-34 | 47 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSRPVLNGLN SGSLRTRLSS VWTLDAFTSE PDCLSVGSGS RDFVSGEACK YLRRKCVEGC 60 VFAPYFDSED GTSLFAAVHK VFGASNATKL LSPIPPSLRL DAILTLSYEA TARVRDPVFG 120 CVSHIFSLHQ QVVNLQAELA YVQARLSAVQ GLPPPPPAPE ASSEADLLEE P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 48 | 139 | 14 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 48 | 139 | 14 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523197.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523197.1 | 1e-122 | PREDICTED: LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 3e-55 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A498KKD9 | 3e-56 | A0A498KKD9_MALDO; Uncharacterized protein | ||||
STRING | XP_010523197.1 | 1e-121 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-53 | LOB domain-containing protein 31 |