PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523119.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 311aa    MW: 34949.3 Da    PI: 8.0655
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.4e-1717561150
                    HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      f +R+ +++KKA+ELS+LC+++v+vi ++++  l++++
  XP_010523119.1 17 SVFRRRQSTVIKKAQELSTLCGVDVCVICYGPDESLQTWP 56
                    4588999********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0015658IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5591355IPR002100Transcription factor, MADS-box
PfamPF003193.7E-131655IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-131687IPR002100Transcription factor, MADS-box
CDDcd002665.71E-171983No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVSSSSSSDK KLSQHNSVFR RRQSTVIKKA QELSTLCGVD VCVICYGPDE SLQTWPQDID  60
KVRDIAFKYR SLDDTLRRKR SLNLSSFLDK IEHNHGRDSM DLGTRVDGLS PDRLSELGGL  120
LERNILCLKQ RLRFIESEKH KAAANKKIDD AQISSSCQPI LGQTQSVNFP VNPRFSRFGM  180
DEQNAAAMLD WNAFSENGYN NSLQYAYCNP GFNGAMVPER RRMIQQNLMA NGGGSGGWPC  240
NGLGFSETGM GGESRGMNME MEWTNSGLLV PQGYMNNNHL MFNPQHPQFR TQTQTPPLLQ  300
FAPFSDIHNI N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523118.11e-131PREDICTED: agamous-like MADS-box protein AGL81
STRINGXP_010523119.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39750.12e-28AGAMOUS-like 81