PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G39750.1
Common NameAGL81, EMB3008
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 355aa    MW: 40177.9 Da    PI: 5.9943
Description AGAMOUS-like 81
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G39750.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251765250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 +++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l++++
  AT5G39750.1 17 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWP 65
                 799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4767IPR002100Transcription factor, MADS-box
PfamPF003194.5E-142564IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-1526100IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.5732668IPR002100Transcription factor, MADS-box
CDDcd002665.86E-183191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0020090anatomyembryo sac central cell
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAIRSLPSSS RCSSSSSSSS YSLASTSLSN RLETIFKKAS ELCTLCDIEA CVIYYGPDGE  60
LKTWPPEREK VEDIALRYSQ LNEALRRKKS VTLYDFLNKK KDKTNLEKKA KITDNDDLKT  120
CLKNVNILKY PLADHYSPDQ VSQLIQSLEP HVSKVRERIR FVESQKHKET KPDHQSLASS  180
SLNHQTQSLN PSQFSLFMYN HGDNTLSQIP VSASNFNQDY FSALLEQSEL KSQIMKQDLC  240
GYEQNMCMSN HGDATLSQIP LSASNLNQDF SALLQDESGL MQQELCGYDQ NMFMNNNNFQ  300
HSFVSNTQDH SAPVVQESVN NNYGLMPHVP CGYDQNLFTS DITNNNLLIN NSMFL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184219020.0
Genevisible249419_s_at0.0
Expression AtlasAT5G39750-
AtGenExpressAT5G39750-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G39750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G39750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168760.0AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankAY1412250.0AY141225.1 Arabidopsis thaliana MADS-box protein AGL81 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198791.10.0AGAMOUS-like 81
SwissprotQ9FIX00.0AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLA0A178UH040.0A0A178UH04_ARATH; Uncharacterized protein
STRINGAT5G39750.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  5. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  6. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  7. Li HJ, et al.
    Arabidopsis CBP1 Is a Novel Regulator of Transcription Initiation in Central Cell-Mediated Pollen Tube Guidance.
    Plant Cell, 2015. 27(10): p. 2880-93
    [PMID:26462908]
  8. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]