PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29162.1 Da PI: 9.9196 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.9 | 5.6e-18 | 22 | 61 | 11 | 50 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R+ +++KKA+ELS+LC+++v+vi ++++g l++++ XP_010523118.1 22 SVFRRRQSTVIKKAQELSTLCGIDVCVICYGPDGSLQTWP 61 4588999********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.4E-4 | 11 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.358 | 18 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-14 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-13 | 21 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.29E-15 | 24 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVSSIAFSSS SFSGKKLSQQ NSVFRRRQST VIKKAQELST LCGIDVCVIC YGPDGSLQTW 60 PQDIDKIRDI DFKYRSLDDT LRRKRSLNLS SFLNKIEHSH GHDSMDLTIK VDGFSSDRFS 120 ELGGLLERNI LCLKQRLTFI ESEKYKTAAN KKIDDVQISS SCQSIFGQTQ SVNLPINPRI 180 FFGFVMDEQN AAAMLGGNAF PDNGCNNSPQ YAYYNPGFNR TMIPERRRRR VIQQNLMING 240 CGSGGALQRF RVSKKGDGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523118.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523118.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL81 | ||||
STRING | XP_010523118.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39750.1 | 1e-27 | AGAMOUS-like 81 |