PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 25136.3 Da PI: 4.8708 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H XP_010523093.1 73 FQCKACKKVFTSHQALGGHRASH 95 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.6E-9 | 72 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.072 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.28E-7 | 73 | 95 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.601.10 | 4.8E-4 | 106 | 138 | No hit | No description |
SuperFamily | SSF57667 | 2.28E-7 | 143 | 170 | No hit | No description |
PROSITE profile | PS50157 | 9.203 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.48 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-12 | 148 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MFSRRLDGEN KSVRRSKRER SSSILSDKED EDLANCLVLL SNSGTVVGDG DDDNKHGDGR 60 GKSVNKGKAG PAFQCKACKK VFTSHQALGG HRASHKKVKG CFASEDKEEE EEEEEEEEEE 120 EEEDEEEEEE EEEERSTAQI TRKRTNSHEC SICHRVFASG QALGGHKRCH WLTPSNNLMR 180 TPSSQREPSL DLNLACSVDR TVMKVGGGGG TGNSSSSWLQ LSSGDWF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523093.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523093.1 | 1e-164 | PREDICTED: zinc finger protein ZAT2 | ||||
TrEMBL | A0A178W296 | 1e-78 | A0A178W296_ARATH; Uncharacterized protein | ||||
TrEMBL | Q3EDL3 | 2e-78 | Q3EDL3_ARATH; At1g02040 | ||||
STRING | XP_010523093.1 | 1e-163 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13895 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 4e-23 | C2H2-like zinc finger protein |