PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522498.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 291aa    MW: 33663.6 Da    PI: 10.0021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-05113146137
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 
                     r+r h ++Er RR++ +++++ L +llP     ++ K
  XP_010522498.1 113 RCRRHMMNERVRREKQRQSYFALHSLLPAG---TKVK 146
                     6788************************96...5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.51E-4101193No hitNo description
SuperFamilySSF474591.83E-8107202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.648112188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6116203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MELKLEDSQK QRKRRKKKDQ MDGHHLFSPD LVFPEEDTFW YEVVGEETNA SVAKQSAFRP  60
YTRNPERGSP DKPAGGGGGT TAEAEKNLKK RMVDLMRSNW EEKRKAAAPA RERCRRHMMN  120
ERVRREKQRQ SYFALHSLLP AGTKVKLTIW HQNAFIFQVM GSKMFFFFGF QKDKNSIVQS  180
ALNRIEELQR EKKELERRIQ MMENGKGKKV ELKVEDPVSG ADSMLETLTC LKALGAKPIT  240
IQAEFSPQEF STVMSVETQI AGDEVEKTVE KTLQEAEWKL LFLPQPPFSK Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117RKRRKKK
21118RKRRKKKD
31318RRKKKD
4109117ARERCRRHM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522498.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522498.10.0PREDICTED: transcription factor bHLH92 isoform X1
TrEMBLD7MXG42e-70D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGXP_010522498.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-51bHLH family protein