PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010522181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 243aa MW: 27028.1 Da PI: 5.1406 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.7e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ XP_010522181.1 4 QCDVCERAPATVICCADEAALCPKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 29.4 | 1.6e-09 | 55 | 94 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ek + +fC +++ llC+dC +++H H XP_010522181.1 55 PPCDICQEKAAFIFCVEDRALLCRDCDEAIHAAntlsanH 94 68*****************************654555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.129 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.67E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-16 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.641 | 52 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.93E-8 | 55 | 98 | No hit | No description |
Pfam | PF00643 | 3.2E-7 | 55 | 95 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MKIQCDVCER APATVICCAD EAALCPKCDV EVHAANKLAS KHQRLLLNSL SXKFPPCDIC 60 QEKAAFIFCV EDRALLCRDC DEAIHAANTL SANHQRFLAT GIRVALSSST CNKEVQKNQS 120 EPSNQQSAGH LPTQQSSNSP PLWPVDDFFH FSGLESCDKQ KGQMDDIGEL EWLADVGLFG 180 DQLHHHHEEE EALPAAEVPQ LPVSQLNHIH SYRPIKSNVS YKKPRLEIQD HDDEEHSIVP 240 DLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010522181.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010522181.1 | 1e-179 | PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 24 | ||||
Swissprot | Q96288 | 1e-121 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A3P6GIL8 | 1e-122 | A0A3P6GIL8_BRAOL; Uncharacterized protein | ||||
TrEMBL | G9HRU7 | 1e-122 | G9HRU7_BRANA; Salt tolerance protein | ||||
STRING | XP_010522181.1 | 1e-179 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2711 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 1e-112 | DBB family protein |
Publications ? help Back to Top | |||
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