PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522155.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 438aa    MW: 48604.4 Da    PI: 4.9901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-11246287854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + +++f eL+ llP++     +K + a+i+  A+eYIk+L
  XP_010522155.1 246 TERERRIHFKDRFLELKHLLPSP-----TKGDRASIVADAIEYIKEL 287
                     59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.541238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-10245303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8246287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-10247287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MYEEMGCYES NAATAGPTAE SGVSQAVEQP QPPTQQTVVT GSTTNSNCSA EVEDLSEFHL  60
SPQDTVPAVS ENVVQLQFHN QVHANAPHDH QIQMVQDLSG SGYVPLQQYV QSNWEGGCQD  120
FVNVGPGSTT TTTDLLSLLH LPRCSVPPSM LPNSSLSFAN SSLSDIMGAS SVAYDPLFHL  180
NFPLQPPFSR DQSQLLGVDD QIDADGGVMY AGGNNHGEFD NGILEFNTDI VNRKGQGSGK  240
KKPFPTERER RIHFKDRFLE LKHLLPSPTK GDRASIVADA IEYIKELLGT IEEFKLLVEK  300
KRFGKHWSKR ARIEEDSENK PLSDVDQSSF NHNNSLRCSW LRRRSKVTEV DVRIIDDEVI  360
IKLVQKKKIN CLLMVSKVLD QLQLDLHHVA GGQIGEHYSF LFNTKIYEGS SVYASAIADT  420
LMEVVEQQYM SAFPTDGF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522155.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522155.10.0PREDICTED: transcription factor bHLH10
RefseqXP_019056512.10.0PREDICTED: transcription factor bHLH10
SwissprotQ84TK11e-161BH010_ARATH; Transcription factor bHLH10
TrEMBLV4M9D81e-166V4M9D8_EUTSA; Uncharacterized protein
STRINGXP_010522155.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-132bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]