PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521860.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 563aa    MW: 62182 Da    PI: 9.9583
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07461510147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010521860.1 461 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 510
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.93E-6275345IPR029071Ubiquitin-related domain
PROSITE profilePS500538.698280344IPR000626Ubiquitin domain
PROSITE profilePS5129415.565456515IPR017930Myb domain
SMARTSM007172.0E-7460513IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10461511IPR009057Homeodomain-like
CDDcd116601.63E-17462512No hitNo description
SuperFamilySSF466899.4E-16462543IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MVLQKRLDYG LNGYQVPATP RAARSARRSA FKKKGADHQI SPFDLLAAVA GNFLREGGNS  60
SSSSNNASGN GDQCPATQSH VKKETLDEDQ TAREETCVHD DAQRRFFVSE ILPKAHQIQS  120
LSPLKDSHLG STSVITSSDS SERVGSRELV FGSKNQTASP DGDCGKSEHN DKDSTVGSLI  180
KEVKLVEDMV PMNEHPHIGL DLKPGYSSSL RSERNYPIKK RRYFDCFNPS QSEEETVKKE  240
GHCGSPHKDI TRNNGKNTSS AILSSTTDQK TKLQSRDSQA KLRIKSFRVP ELFIEIPETS  300
TVGSLKRTVL EAVNAILGGG LRIGVLVQGK KLRDDNRTLL QTGIPLDALS DSLGFCLEPN  360
PSQSPKPLCP GDSNPPLPCN IPQPLTRYLP SPGSRNVLAK RNNSVESDRD YKPSASRAMT  420
GKTTSEYSRA LVPVPPFQAE AITVIPPRKP KRCEVAQRRI RRPFSVAEVE ALVQAVEKLG  480
TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY  540
WSQQQGKHQQ LTQSHGPETS LGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-564485474103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521860.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-168TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A078FRZ60.0A0A078FRZ6_BRANA; BnaA08g29010D protein
STRINGXP_010521857.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-147TRF-like 2