PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521859.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 633aa    MW: 69822.4 Da    PI: 9.6954
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07531580147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_010521859.1 531 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 580
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.16E-5345415IPR029071Ubiquitin-related domain
PROSITE profilePS500538.698350414IPR000626Ubiquitin domain
PROSITE profilePS5129415.565526585IPR017930Myb domain
SMARTSM007172.0E-7530583IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10531581IPR009057Homeodomain-like
CDDcd116602.18E-17532582No hitNo description
SuperFamilySSF466891.11E-15532613IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MVLQKRLDYG LNGYQRSAFK KKGADHQISP FDLLAAVAGN FLREGGNSSS SSNNASGNGD  60
QCPATQSHVK KETLDEDQTA REETCVHDDA QRRFFVSEIL PKAHQIQSLS PLKDSHLGST  120
SVITSSDSSE RVGSRELVFG SKNQTASPDG DCGKSEHNDK DSTVGSLIKE VKLVEDMVPM  180
NEHPHIGRTP TYGNSILQNP LPVEPDGVDL VNRGNDDDDE NSARAYVSDT TKSFRSTLHV  240
GDRRIRKILA SKCCTVSPKP KGTTGTNSSL DLKPGYSSSL RSERNYPIKK RRYFDCFNPS  300
QSEEETVKKE GHCGSPHKDI TRNNGKNTSS AILSSTTDQK TKLQSRDSQA KLRIKSFRVP  360
ELFIEIPETS TVGSLKRTVL EAVNAILGGG LRIGVLVQGK KLRDDNRTLL QTGIPLDALS  420
DSLGFCLEPN PSQSPKPLCP GDSNPPLPCN IPQPLTRYLP SPGSRNVLAK RNNSVESDRD  480
YKPSASRAMT GKTTSEYSRA LVPVPPFQAE AITVIPPRKP KRCEVAQRRI RRPFSVAEVE  540
ALVQAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL  600
LDRVLTAHAY WSQQQGKHQQ LTQSHGPETS LGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-565186174103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521859.10.0PREDICTED: telomere repeat-binding protein 5 isoform X3
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLV4L1H90.0V4L1H9_EUTSA; Uncharacterized protein
STRINGXP_010521857.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2