PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010521857.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 645aa MW: 71056.8 Da PI: 9.882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 543 | 592 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_010521857.1 543 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 592 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.2E-5 | 357 | 427 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.698 | 362 | 426 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.565 | 538 | 597 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 542 | 595 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 543 | 593 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.02E-17 | 544 | 594 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-15 | 544 | 625 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MVLQKRLDYG LNGYQVPATP RAARSARRSA FKKKGADHQI SPFDLLAAVA GNFLREGGNS 60 SSSSNNASGN GDQCPATQSH VKKETLDEDQ TAREETCVHD DAQRRFFVSE ILPKAHQIQS 120 LSPLKDSHLG STSVITSSDS SERVGSRELV FGSKNQTASP DGDCGKSEHN DKDSTVGSLI 180 KEVKLVEDMV PMNEHPHIGR TPTYGNSILQ NPLPVEPDGV DLVNRGNDDD DENSARAYVS 240 DTTKSFRSTL HVGDRRIRKI LASKCCTVSP KPKGTTGTNS SLDLKPGYSS SLRSERNYPI 300 KKRRYFDCFN PSQSEEETVK KEGHCGSPHK DITRNNGKNT SSAILSSTTD QKTKLQSRDS 360 QAKLRIKSFR VPELFIEIPE TSTVGSLKRT VLEAVNAILG GGLRIGVLVQ GKKLRDDNRT 420 LLQTGIPLDA LSDSLGFCLE PNPSQSPKPL CPGDSNPPLP CNIPQPLTRY LPSPGSRNVL 480 AKRNNSVESD RDYKPSASRA MTGKTTSEYS RALVPVPPFQ AEAITVIPPR KPKRCEVAQR 540 RIRRPFSVAE VEALVQAVEK LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP 600 QQRRGEPVPQ ELLDRVLTAH AYWSQQQGKH QQLTQSHGPE TSLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 6e-56 | 530 | 629 | 4 | 103 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010521857.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010521857.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
Refseq | XP_010521858.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X2 | ||||
Swissprot | Q6R0E3 | 0.0 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | V4L1H9 | 0.0 | V4L1H9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010521857.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3240 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 0.0 | TRF-like 2 |