PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521782.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 406aa    MW: 44233.9 Da    PI: 7.5245
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17151200155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010521782.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
                     78*******************......55************************997 PP
2AP241.53.3e-13243293155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010521782.1 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 293
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-9151200IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-16151209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-17152208IPR001471AP2/ERF domain
PROSITE profilePS5103217.82152208IPR001471AP2/ERF domain
CDDcd000181.03E-10152210No hitNo description
SMARTSM003803.3E-33152214IPR001471AP2/ERF domain
CDDcd000185.91E-25243303No hitNo description
PfamPF008479.9E-9243293IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-17243302IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-16244301IPR001471AP2/ERF domain
PROSITE profilePS5103215.725244301IPR001471AP2/ERF domain
SMARTSM003803.7E-33244307IPR001471AP2/ERF domain
PRINTSPR003675.0E-6245256IPR001471AP2/ERF domain
PRINTSPR003675.0E-6283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLDLNLEADS PESTQYGDSY ADRHTSDGSG NRMEESATST SSLVNADASN NGGGDYDSCS  60
TRAFTLSFGI LKVGGGGVDE SAAAVVTKDL FPASGDCGRL RDFGGMNSRT WIDLSPDGAG  120
SGVKAMPPAP VPAPATAQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VDADINFTLS DYEEDMKQMQ SLTKEEFVHI LRRHSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGRDAVTNF  300
EPSSYDESEM MAEASNEGDC ELDLNLRISL ASGSPPKQKG RCFQLPSEPH DKREGRAKGK  360
RESGEWGWER MSSTPPLFSA AAAAASSGFS FSHNNPSLGF HFSRPN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521782.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521783.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-145RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN31e-162R0HUN3_9BRAS; Uncharacterized protein
STRINGXP_010521782.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-155related to AP2.7