PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010521403.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 376aa    MW: 42159.9 Da    PI: 5.0115
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010521403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.33.6e-192112581359
                     E--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  13 KevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     K v+++ + r+YYrC+s+ gC ++k+vers++dp+++++tY geH+h+
  XP_010521403.1 211 KRVRSNLYNRNYYRCSSSkGCLARKQVERSNSDPNIFIVTYAGEHTHP 258
                     7899************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031061.1E-16206258IPR003657WRKY domain
PROSITE profilePS5081120.943211260IPR003657WRKY domain
SMARTSM007747.7E-17211259IPR003657WRKY domain
SuperFamilySSF1182902.75E-16211260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-18211260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSEGWDLFAV VRSCSSLATS IKEKAGDGDE DNDDNLKPES PLPPMAGSNF DRQEHHHHSF  60
SFAAGNDRDR ERRYSDMDPY DCNELRDSCK PFLPRWWSSS PPSSSSSSSL ALVSNSVLKQ  120
EQGNELQDRK AHGGVRVFPS SATTISPSVF VFRGQREEQQ QQQQHTQVPG RSRKRKNQQK  180
RTICHVTQEN LSSEILFIFS GKSLPGQKTA KRVRSNLYNR NYYRCSSSKG CLARKQVERS  240
NSDPNIFIVT YAGEHTHPRP THRNSLAGST RNKPQPIDPT RKPDPGQAGS SDAAKSTENL  300
SPTTPLKEND DVQGTHVDED VVSQEITMDD EDEIDDIDND DDDDDDAEDL LIPNLAVRDR  360
EDFFSDMQGF AGNFPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177GRSRKRKNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010521403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010521403.10.0PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX83e-87WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A1J3E2741e-98A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRINGXP_010521403.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-85WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]