PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010521043.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 326aa MW: 37089.3 Da PI: 9.8503

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010521043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.2	2.3e-28	42	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+eme ++r+++lk+plWe++s+kmre gf+rs+k+Ckek+en+ k++k++keg+++++ + +t+++ d+le XP_010521043.1 42 RWPRSETLALLRIRSEMELAFRDSNLKAPLWEQISRKMRELGFRRSAKKCKEKFENVYKYHKRTKEGRSGKR--EGKTYQFSDELE 125 8********************************************************************974..445699988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0044	39	101	IPR001005	SANT/Myb domain
CDD	cd12203	1.98E-26	41	106	No hit	No description
PROSITE profile	PS50090	6.853	41	99	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-19	41	126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLGDSGEVLE SSAVAASAGG EEKDVKLEDS GERATVGGGG NRWPRSETLA LLRIRSEMEL 60 AFRDSNLKAP LWEQISRKMR ELGFRRSAKK CKEKFENVYK YHKRTKEGRS GKREGKTYQF 120 SDELEAFENI HHYPTEPKSR PVKPPTTTTT TTAASIVPWI SSSNPSSGTN PTLFTKQQPT 180 PPFVLNHSAH TVLGSGHKLT NPYNFARNQE EMQKRFLETL EKREKERIER EQAWRVQETA 240 RINREYEIIA HERSASAAKD TAIISFLQKV SGQQQQQQQL QKQNHTQQQT REDHSIAFLN 300 DQKHETRIVE AASKTSNSDS SYMLSP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010521043.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010521043.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-92	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A178W7Z2	3e-90	A0A178W7Z2_ARATH; GT2
STRING	XP_010521043.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-55	Trihelix family protein