PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520836.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 331aa    MW: 35952.1 Da    PI: 4.3605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.2e-16186222135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_010520836.1 186 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGM 222
                     *******99************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.4E-84580IPR010399Tify domain
PROSITE profilePS5132013.1274580IPR010399Tify domain
PfamPF062003.0E-104879IPR010399Tify domain
PROSITE profilePS5101712.749114156IPR010402CCT domain
PfamPF062032.3E-14114156IPR010402CCT domain
SMARTSM004012.4E-10180233IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.932184238IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-11184230No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15184227IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.42E-16185229No hitNo description
PROSITE patternPS003440186213IPR000679Zinc finger, GATA-type
PfamPF003201.0E-13186221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAILPIQIV EDEGEYDGGG SDDLMDDVEE MKVNSVSDVG VSMGSSSRTS ELTLSFEGEV  60
YVFPAVTPEK VQAVLLLLGG RDIPTAVPTV ELPFENNRGL CVGDNPRRSN LSRRLASLVR  120
FREKRKERCF DKRIRYTVRK EVAQRMHRKN GQFASVKESS GGSNWESAQS DLQDGTTRSE  180
TLIRRCQHCG VSENNTPAMR RGPAGPRTLC NACGLMWANK GMLRDLSKGA RTSIDQTEPE  240
TLLDIKPSIM GEDSGNPEEL QIPIDPANAI VEVPTDADGN PDGKDLQEAA GMSNSMPVGI  300
VSSSADDDET EQLAELVNPS DTDLDMPSSF G
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520836.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-71GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GNE41e-150A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLV4V5081e-150V4V508_9ROSI; Uncharacterized protein
STRINGXP_010520835.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-66ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]