PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010520670.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 624aa MW: 69498.7 Da PI: 9.1484

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010520670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	531	580	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ I r+ +Rt ++k++w ++ XP_010520670.1 531 RRPFSVGEVEALVQAVEKLGTGRWRDIKRHAFegaDHRTYVDLKDKWKTL 580 568888999********************999***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	1.04E-7	340	413	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50053	9.787	344	413	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	5.6E-4	347	413	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-11	525	582	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.412	526	585	IPR017930	Myb domain
SMART	SM00717	2.1E-8	530	583	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-5	531	580	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.26E-15	532	613	IPR009057	Homeodomain-like
CDD	cd11660	1.88E-17	532	582	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MYSNRIDCFI GVGNIGGMHL SHKRLEFGDN GYQLPANARA RRSARKKRCF KKNNGDDDRM 60 GAFDLLATVA GSLLLEKGSS QPARYDPIHL SEDKSVAVQN TVRDEFLDEE KPLKAETFCG 120 DNHSKGSSGH CHGLHCGTGT IMRNPGDSLM SEKLENVVEG FGNPGQTDSC KVGNFDQGFK 180 AGIDGDAAVV LEAKPDVVVS LGCNNSSSRA ELPACGKDAS HGSRDVVNLV SSDDDENFLA 240 FSHCSRSQKQ VPRIGDRRIR KIWATRHRKG GLKNADVKPW YSAKRNYCLH HQRNYPIKKR 300 KFFDNISELN SDDYHLPPKM GRGSRTIFSM KCRNGSYVSR DPHVRLRIKS FRVPELFIEI 360 PETATVGSLK RMVMEAVTTL LGGGLRVGLM LQGKKLRDDS KTLLQTGISQ DNTHLDSMGF 420 CLEPSSEAGP IPCDTPKPLT RYPPVDIMHA CDDLPICRAA DLSHVLESDH DSAPSPDVSY 480 GEKNRTDDSR ALFPMEAAVL ASRELTKLAA RPPDRKSKRP EQQQAAQRRI RRPFSVGEVE 540 ALVQAVEKLG TGRWRDIKRH AFEGADHRTY VDLKDKWKTL VHTARIAPQQ RRGEPVPHEL 600 LDRVLTAHSF WSQSQPPAER LLLL

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MYSNRIDCFI GVGNIGGMHL SHKRLEFGDN GYQLPANARA RRSARKKRCF KKNNGDDDRM  60
GAFDLLATVA GSLLLEKGSS QPARYDPIHL SEDKSVAVQN TVRDEFLDEE KPLKAETFCG  120
DNHSKGSSGH CHGLHCGTGT IMRNPGDSLM SEKLENVVEG FGNPGQTDSC KVGNFDQGFK  180
AGIDGDAAVV LEAKPDVVVS LGCNNSSSRA ELPACGKDAS HGSRDVVNLV SSDDDENFLA  240
FSHCSRSQKQ VPRIGDRRIR KIWATRHRKG GLKNADVKPW YSAKRNYCLH HQRNYPIKKR  300
KFFDNISELN SDDYHLPPKM GRGSRTIFSM KCRNGSYVSR DPHVRLRIKS FRVPELFIEI  360
PETATVGSLK RMVMEAVTTL LGGGLRVGLM LQGKKLRDDS KTLLQTGISQ DNTHLDSMGF  420
CLEPSSEAGP IPCDTPKPLT RYPPVDIMHA CDDLPICRAA DLSHVLESDH DSAPSPDVSY  480
GEKNRTDDSR ALFPMEAAVL ASRELTKLAA RPPDRKSKRP EQQQAAQRRI RRPFSVGEVE  540
ALVQAVEKLG TGRWRDIKRH AFEGADHRTY VDLKDKWKTL VHTARIAPQQ RRGEPVPHEL  600
LDRVLTAHSF WSQSQPPAER LLLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	5e-48	512	615	1	101	Telomere binding protein TBP1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	300	QRNYPIKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269\|PubMed:15688221}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010520670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056375.1	0.0	PREDICTED: telomere repeat-binding protein 2-like
Swissprot	Q9SNB9	0.0	TRP2_ARATH; Telomere repeat-binding protein 2
TrEMBL	R0HIP8	0.0	R0HIP8_9BRAS; Uncharacterized protein
STRING	XP_010520670.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3240	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	2e-96	TRF-like 2

Publications ? help Back to Top
Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251]