PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520391.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 379aa    MW: 43455.8 Da    PI: 7.9077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.5e-07213235123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  XP_010520391.1 213 HHCTICGKGFKRDANLRMHMRAH 235
                     68*******************99 PP
2zf-C2H212.20.00055345359620
                     TTEEESSHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHi 20 
                     Cg++Fsrk+ L++H 
  XP_010520391.1 345 CGTRFSRKDKLMSHV 359
                     **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.36E-6212237No hitNo description
PROSITE profilePS5015712.715213240IPR007087Zinc finger, C2H2
SMARTSM003550.001213235IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-6213237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SMARTSM0035577275308IPR015880Zinc finger, C2H2-like
SMARTSM0035536313335IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4335360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMNSRASTSC FSDATTTTSS DDEVSISLLY NLSIIQDKVN QIQSLASFMI SHNHHDHDHH  60
HHRNHREVGS RSLAMADVMT LVQGIISAAS SMMFTCQQFD VVPNNKNNGS DDHADEATVV  120
MELSGQDQID PDHDFMRGSS LLAVQEEGRI SFSDQILRNL EWYGTDTNNP STGKNNVLSK  180
NTNKRKSDED QNKNKNYEVV ELNADDLLAK YTHHCTICGK GFKRDANLRM HMRAHGDEYK  240
TREALINPMN RSINDQENGD KDLKTTDIPH RKLYYSCPQE GCRWNQRHKR FQPLKSVICV  300
KNHYKRSHCP KMYMCRRCNV KKFSVLSDLR THEKHCGEVK WVCSCGTRFS RKDKLMSHVA  360
LFLGHVPVDS ELKQEHGQM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010520391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520391.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-138STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLR0GYR71e-140R0GYR7_9BRAS; Uncharacterized protein
STRINGXP_010520391.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-134C2H2 family protein