PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010519933.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CPP
Protein Properties Length: 831aa    MW: 90451.6 Da    PI: 5.8229
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010519933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.41.1e-16474513342
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C Nk e+
  XP_010519933.1 474 NKRCNCKKTKCLKLYCDCFAAGVYCDESCACQGCLNKPEH 513
                     799*********************************9876 PP
2TCR49.87e-16560598139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs+ C+Ce+CkN 
  XP_010519933.1 560 RHKRGCNCKKSMCLKKYCECYQGGVGCSSGCRCENCKNI 598
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.0E-14472513IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.22473600IPR005172CRC domain
PfamPF036381.7E-12475510IPR005172CRC domain
SMARTSM011142.4E-16560601IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-11562597IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MDSPESSTAK VNPDVNTDAA VNVSRSLNSP SVQESPFSHF VSTFSPLTLG DSSRSSHVFL  60
GLNSPPAIFT TPRANPVHES GLVISDGNTQ ASNEEEKKEK GNENQDKEPR DCVNWDKPAI  120
DLDACLANDS RATATDNDDQ VQSSGSSECV DRYLADNAEE KSTWLDHTVD QKLKHIRQVL  180
EISPSNADTA TCSSLNVMAD YEKEMLTKGL IEEDAKGKGV LGGGQGTGRE ESEKVGCEEE  240
RKFPSEIPSE HMQTVQSLED PNNNVESLLS KPNDIVVLES EGNQQRGMSR RCLQFEEAQP  300
KANSNTNSSL AMTAFLRPVS APSESDPFDS STSSCSRHLT DTSPTVTDVP CSATNIKQIA  360
PASKPLGIGV HLNSIIKTVP FHHDGNASLK PSDRSMSVLE IRSKVIADTS PPQITNDEFL  420
QDPEDFMSLQ IIDDLATPGD KRKFVPENPD HFEQHSQLSP KKKKLSSSPD DDGNKRCNCK  480
KTKCLKLYCD CFAAGVYCDE SCACQGCLNK PEHAETVLQT RQQIESRNPL AFAPKIIQSG  540
SDFSMSNMET GTLTTPASAR HKRGCNCKKS MCLKKYCECY QGGVGCSSGC RCENCKNIYG  600
KKDEFLSSRE ITERPEPDRR MDLAVARKSS LQAETYHMHK LTPVTPSLQH SDRGKVAPKS  660
QIIIRRCNHP PDSDPRSLRH SDGTDPNPEA SVEATETSSY NHKTSQNSPE MAGFGPVTTN  720
PLPTPTGCSS TSLCTSPTFG SGSGVFNVRE DGYTHEILTD ASMAIKPVKV CSPSRKRVSP  780
PRSCLSQAGS SSSVPLRSGR KFILKALPPF PPLTPCVENK SITPEDNPQP E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1647759814121Protein lin-54 homolog
5fd3_B2e-1647759814121Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010519933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010519933.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2
STRINGXP_010519931.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-57Tesmin/TSO1-like CXC domain-containing protein