PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010519932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | CPP | ||||||||
Protein Properties | Length: 856aa MW: 93298.9 Da PI: 5.9818 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.3 | 1.1e-16 | 499 | 538 | 3 | 42 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C Nk e+ XP_010519932.1 499 NKRCNCKKTKCLKLYCDCFAAGVYCDESCACQGCLNKPEH 538 799*********************************9876 PP | |||||||
2 | TCR | 49.7 | 7.2e-16 | 585 | 623 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs+ C+Ce+CkN XP_010519932.1 585 RHKRGCNCKKSMCLKKYCECYQGGVGCSSGCRCENCKNI 623 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.0E-14 | 497 | 538 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.22 | 498 | 625 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.8E-12 | 500 | 535 | IPR005172 | CRC domain |
SMART | SM01114 | 2.4E-16 | 585 | 626 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.1E-11 | 587 | 622 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MDSPESSTAK VNPDVNTDAA VNVSRSLNSP SVQESPFSHF VSTFSPLTLG DSSRSSHVFL 60 GLNSPPAIFT TPRANPVHES GLVISDGNTQ ASNEEEKKEK GNENQDKEPR DCVNWDKPAI 120 DLDACLANDS RATATDNDDQ VQSSGSSECV DRYLADNAEE KSTWLDHTVD QKLKHIRQVL 180 EISPSNADTA TCSSLNVMAD YEKEMLTKGL IEEDAKGKGV LGGGQGTGRE EVTNGEGKCK 240 YCSKELHDQC KCLYSQSEKV GCEEERKFPS EIPSEHMQTV QSLEDPNNNV ESLLSKPNDI 300 VVLESEGNQQ RGMSRRCLQF EEAQPKANSN TNSSLAMTAF LRPVSAPSES DPFDSSTSSC 360 SRHLTDTSPT VTDVPCSATN IKQIAPASKP LGIGVHLNSI IKTVPFHHDG NASLKPSDRS 420 MSVLEIRSKV IADTSPPQIT NDEFLQDPED FMSLQIIDDL ATPGDKRKFV PENPDHFEQH 480 SQLSPKKKKL SSSPDDDGNK RCNCKKTKCL KLYCDCFAAG VYCDESCACQ GCLNKPEHAE 540 TVLQTRQQIE SRNPLAFAPK IIQSGSDFSM SNMETGTLTT PASARHKRGC NCKKSMCLKK 600 YCECYQGGVG CSSGCRCENC KNIYGKKDEF LSSREITERP EPDRRMDLAV ARKSSLQAET 660 YHMHKLTPVT PSLQHSDRGK VAPKSQIIIR RCNHPPDSDP RSLRHSDGTD PNPEASVEAT 720 ETSSYNHKTS QNSPEMAGFG PVTTNPLPTP TGCSSTSLCT SPTFGSGSGV FNVREDGYTH 780 EILTDASMAI KPVKVCSPSR KRVSPPRSCL SQAGSSSSVP LRSGRKFILK ALPPFPPLTP 840 CVENKSITPE DNPQPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 502 | 623 | 14 | 121 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 502 | 623 | 14 | 121 | Protein lin-54 homolog |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010519932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010519931.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Refseq | XP_010519932.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
Refseq | XP_019056366.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
STRING | XP_010519931.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 3e-57 | Tesmin/TSO1-like CXC domain-containing protein |